Browse Element(s) Details


OsAffx.26202.1.S1_x_at

Description tigr:9632.m02671
TID=OsAffx.26202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2830011/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g282006/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28280NANA4+16545005..16547418Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g28290OsAffx.26201.1.S1_at10/114+16548556..16553829transposon protein, putative, Mutator sub-class
LOC_Os04g28300OsAffx.26202.1.S1_x_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300OsAffx.26202.1.S1_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300Os.53129.1.S1_x_at5/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28310OsAffx.26203.1.S1_at11/114+16572904..16576139hypothetical protein
LOC_Os04g28320NANA4+16576802..16577005hypothetical protein
LOC_Os04g28330NANA4+16580069..16580278hypothetical protein
LOC_Os04g28350OsAffx.26201.1.S1_at9/114+16586818..16591388transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26202.1.S1_x_at--582--5571Chr04:16569281..16569305 (25 bp)
GAAAGTGGAACAACCGTGAGCATTC
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--971--7371Chr04:16569296..16569320 (25 bp)
GTGAGCATTCACACATACGGTGTTG
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--899--10771Chr04:16569477..16569501 (25 bp)
TTGATGCAATCTCTACTTATGGGTT
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--1009--10171Chr04:16569511..16569535 (25 bp)
TATACAAACCTACAGCATGATGATA
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--712--6212Chr04:16569566..16569590 (25 bp)
GAGGCTGACAATCTCTTTATATCAG
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--397--3852Chr04:16569612..16569636 (25 bp)
CTGACTCTCGTCTTCTTAATCATAT
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--1036--9592Chr04:16569631..16569655 (25 bp)
TCATATCGTCAGGATGTTACTCAAT
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--226--7911Chr04:16569664..16569688 (25 bp)
GGTTGCCAAGGCTAGTAATTATCTG
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--504--352Chr04:16569705..16569729 (25 bp)
ATAACCTCACTCTTGAAGCTTCAAC
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--1079--2512Chr04:16569727..16569751 (25 bp)
AACTATTTCTTTACTGGCTTCTCTC
LOC_Os04g28300
OsAffx.26202.1.S1_x_at--985--8292Chr04:16569742..16569766 (25 bp)
GGCTTCTCTCTTCTCAAGGGAAGGT
LOC_Os04g28300
Target Sequence 
GAAAGTGGAACAACCGTGAGCATTCACACATACGGTGTTGTGCTTGGGGGACTTTGTAGAAACAATTGCACCGATGAAGC
AAATATGCTGTTGGAGAAATTATTTGCTATGAATGTAAAATTTGATATTATTACTTTCAATATTGTGATTAGTGCAATGT
TCAAAGTTGGCAGAAGGCAAGAGGCTAAGGAATTGTTTGATGCAATCTCTACTTATGGGTTGGTGCCAAATATACAAACC
TACAGCATGATGATAACAAATCTTATAAAAGAAGAGTCATACGAAGAGGCTGACAATCTCTTTATATCAGTGGAGAAGAG
TGGCCATGCTTCTGACTCTCGTCTTCTTAATCATATCGTCAGGATGTTACTCAATAAAGCTGAGGTTGCCAAGGCTAGTA
ATTATCTGTCTATAATTGGCGAGAATAACCTCACTCTTGAAGCTTCAACTATTTCTTTACTGGCTTCTCTCTTCTCAAGG
GAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26202.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis