Browse Element(s) Details


OsAffx.26203.1.S1_at

Description tigr:9632.m02672
TID=OsAffx.26203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2831011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28290OsAffx.26201.1.S1_at10/114+16548556..16553829transposon protein, putative, Mutator sub-class
LOC_Os04g28300OsAffx.26202.1.S1_x_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300OsAffx.26202.1.S1_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300Os.53129.1.S1_x_at5/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28310OsAffx.26203.1.S1_at11/114+16572904..16576139hypothetical protein
LOC_Os04g28320NANA4+16576802..16577005hypothetical protein
LOC_Os04g28330NANA4+16580069..16580278hypothetical protein
LOC_Os04g28350OsAffx.26201.1.S1_at9/114+16586818..16591388transposon protein, putative, Mutator sub-class
LOC_Os04g28360NANA4+16598611..16598814hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26203.1.S1_at--58--9471Chr04:16572942..16572966 (25 bp)
TCTGGCGGTGTTGTTGCAGTTCTCC
LOC_Os04g28310
OsAffx.26203.1.S1_at--156--6051Chr04:16574981..16575005 (25 bp)
GAGATTTTCGGGTCCGCCTTGTCAG
LOC_Os04g28310
OsAffx.26203.1.S1_at--311--10811Chr04:16574999..16575023 (25 bp)
TTGTCAGTTCTCACACGTTCTGGTC
LOC_Os04g28310
OsAffx.26203.1.S1_at--679--1891Chr04:16575013..16575037 (25 bp)
ACGTTCTGGTCTACTTTGGTCTGAA
LOC_Os04g28310
OsAffx.26203.1.S1_at--296--3851Chr04:16575033..16575057 (25 bp)
CTGAAGTCTGAACCCCTGAGAGTCA
LOC_Os04g28310
OsAffx.26203.1.S1_at--100--8911Chr04:16575049..16575073 (25 bp)
TGAGAGTCAGAGACGCTCCTGCTCT
LOC_Os04g28310
OsAffx.26203.1.S1_at--968--7111Chr04:16575094..16575118 (25 bp)
GTCAGGCCATAGCTGATAGCTGCCA
LOC_Os04g28310
OsAffx.26203.1.S1_at--186--6331Chr04:16575230..16575254 (25 bp)
GATGCAAATTTTACACTTTTACAGC
LOC_Os04g28310
OsAffx.26203.1.S1_at--1158--10331Chr04:16575247..16575271 (25 bp)
TTTACAGCATTTCAGTGTCCTCTCT
LOC_Os04g28310
OsAffx.26203.1.S1_at--1010--9511Chr04:16575267..16575291 (25 bp)
TCTCTCCTCTTCTTGATGTACTTGG
LOC_Os04g28310
OsAffx.26203.1.S1_at--431--10551Chr04:16575276..16575300 (25 bp)
TTCTTGATGTACTTGGTGCGCACCG
LOC_Os04g28310
Target Sequence 
TCTGGCGGTGTTGTTGCAGTTCTCCGGCGTGCTCACGGCGGCGAGGACGCTGCCGGGGGAGGAGTGGCTGCTGCCGGAGG
GCGGCGGCGTCGTACGGGCGGTGGTGGAGATGCTCGTCGGCTCCAAGTCCGGCGGAGGCGGCGCGAGATTTTCGGGTCCG
CCTTGTCAGTTCTCACACGTTCTGGTCTACTTTGGTCTGAAGTCTGAACCCCTGAGAGTCAGAGACGCTCCTGCTCTTTT
TCCCAAAGCTCAGCCTCGTCAGGCCATAGCTGATAGCTGCCATGAGTTAGTAGATGCAAATTTTACACTTTTACAGCATT
TCAGTGTCCTCTCTCCTCTTCTTGATGTACTTGGTGCGCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis