Browse Element(s) Details


OsAffx.26201.1.S1_at

Description tigr:9632.m02670
TID=OsAffx.26201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2829010/11transposon protein, putative, Mutator sub-class
LOC_Os04g283509/11transposon protein, putative, Mutator sub-class
LOC_Os05g315106/11transposon protein, putative, Mutator sub-class
LOC_Os11g441805/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28270OsAffx.26200.1.S1_at11/114+16526236..16526750hypothetical protein
LOC_Os04g28270Os.9328.1.S1_at1/114+16526236..16526750hypothetical protein
LOC_Os04g28280NANA4+16545005..16547418Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g28290OsAffx.26201.1.S1_at10/114+16548556..16553829transposon protein, putative, Mutator sub-class
LOC_Os04g28300OsAffx.26202.1.S1_x_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300OsAffx.26202.1.S1_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300Os.53129.1.S1_x_at5/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28310OsAffx.26203.1.S1_at11/114+16572904..16576139hypothetical protein
LOC_Os04g28320NANA4+16576802..16577005hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26201.1.S1_at--827--3271Chr04:16553506..16553530 (25 bp)
CAAAAATGTGTTTTAGCCGCCAGTA
LOC_Os04g28290
OsAffx.26201.1.S1_at--1079--991NONE
AGGATCGAGGTGGTTTTGCTTACTA
NONE
OsAffx.26201.1.S1_at--297--7654Chr11:26178568..26178591 (24 bp)
GGGAGATTAATCACACGTCGTATTC
NONE
OsAffx.26201.1.S1_at--583--7214Chr11:26178583..26178607 (25 bp)
GTCGTATTCTCCTCCATGCGTTGGA
NONE
OsAffx.26201.1.S1_at--274--10654Chr11:26178649..26178671 (23 bp)
TTCCGACGGCGGAGAATCCAGGTAT
NONE
OsAffx.26201.1.S1_at--119--6874Chr11:26181470..26181494 (25 bp)
GTATTGGCAATTGGCAGGTATTCCT
LOC_Os11g44180
OsAffx.26201.1.S1_at--1123--1014Chr11:26181485..26181508 (24 bp)
AGGTATTCCTTGTGCACATGCTATT
LOC_Os11g44180
OsAffx.26201.1.S1_at--634--7374Chr11:26181522..26181546 (25 bp)
GTGAGCTCAAAGCAACCTGAAGATT
LOC_Os11g44180
OsAffx.26201.1.S1_at--803--10514Chr11:26181938..26181962 (25 bp)
TTCAGGAATGTAGCAGGCCGCAGAA
LOC_Os11g44180
OsAffx.26201.1.S1_at--757--10434Chr11:26181968..26181992 (25 bp)
TTAGGCCATCTGTAGCTGCAGGAAC
LOC_Os11g44180
OsAffx.26201.1.S1_at--420--53Chr05:18250448..18250472 (25 bp)
ATTGATTTGCCATCCCAGAGCAGCA
LOC_Os05g31510
Target Sequence 
CAAAAATGTGTTTTAGCCGCCAGTAAAAACGTGTTTTCTAGTAGTGCTAGAAGGACATTACATACCATCAAAGATAATTT
AGATAAGAGTGAGAATAGGATCGAGGTGGTTTTGCTTACTAGGTTGGATCTAACGTGGAGAAAGAGAACCTGGGAGATTA
ATCACACGTCGTATTCTCCTCCATGCGTTGGACTCTTCTCCCTCACAAGTCCTCTCATCATCTCCTCTCTCCCTTCCGAC
GGCGGAGAATCCAGGTATTGGCAATTGGCAGGTATTCCTTGTGCACATGCTATTACTGCATTATTTGTGAGCTCAAAGCA
ACCTGAAGATTACATAGCAGATTGCTACAGTGTTGAGGTTCAGGAATGTAGCAGGCCGCAGAAAAGGTTTAGGCCATCTG
TAGCTGCAGGAACTTCGCAGCAAAAAGTTCATGTGCAGATTGATTTGCCATCCCAGAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis