Browse Element(s) Details


OsAffx.26200.1.S1_at

Description tigr:9632.m02668
TID=OsAffx.26200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2827011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed
LOC_Os04g28260OsAffx.26199.1.S1_x_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.26199.1.S1_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.2413.1.S1_x_at7/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.11796.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.28358.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28270OsAffx.26200.1.S1_at11/114+16526236..16526750hypothetical protein
LOC_Os04g28270Os.9328.1.S1_at1/114+16526236..16526750hypothetical protein
LOC_Os04g28280NANA4+16545005..16547418Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g28290OsAffx.26201.1.S1_at10/114+16548556..16553829transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26200.1.S1_at--634--5891Chr04:16526591..16526615 (25 bp)
GAGCGGCAAGCCAGACCTTGGCATT
LOC_Os04g28270
OsAffx.26200.1.S1_at--80--1391Chr04:16526579..16526603 (25 bp)
AGACCTTGGCATTGGCGGGTTCATG
LOC_Os04g28270
OsAffx.26200.1.S1_at--858--9431Chr04:16526471..16526572 (25 bp)
TCGGTGCACGGCACGCAGGTTCGTC
LOC_Os04g28270
OsAffx.26200.1.S1_at--438--6132Chr09:12863580..12863604 (25 bp)
GAGGGCCGTGCAGGAGTTGTGGAAC
NONE
OsAffx.26200.1.S1_at--459--8171Chr04:16526387..16526411 (25 bp)
GGAACGGTTCGGACACCGAGCAGAA
LOC_Os04g28270
OsAffx.26200.1.S1_at--308--5052Chr09:12863619..12863639 (21 bp)
GCAGAAGAGGACATACCCACCGGTT
NONE
OsAffx.26200.1.S1_at--795--1311Chr04:16526363..16526387 (25 bp)
AGAGGACATACCCACCGGTTCTGCT
LOC_Os04g28270
OsAffx.26200.1.S1_at--1142--7611Chr04:16526324..16526348 (25 bp)
GGGACAACGACTGCGGTGTCCATCA
LOC_Os04g28270
OsAffx.26200.1.S1_at--1115--3971Chr04:16526311..16526335 (25 bp)
CGGTGTCCATCACTGGCTGCGCTTG
LOC_Os04g28270
OsAffx.26200.1.S1_at--643--9151Chr04:16526294..16526318 (25 bp)
TGCGCTTGCCACTACCATCGCTGGT
LOC_Os04g28270
OsAffx.26200.1.S1_at--9--9991Chr04:16526282..16526306 (25 bp)
TACCATCGCTGGTCTCGTGGAAGAG
LOC_Os04g28270
Target Sequence 
GAGCGGCAAGCCAGACCTTGGCATTGGCGGGTTCATGCTCAAGTCGGTGCACGGCACGCAGGTTCGTCGGTGTCGACGGA
GGCGACGACTGCGGGGATGGTGGCCGCGAGGGCCGTGCAGGAGTTGTGGAACGGTTCGGACACCGAGCAGAAGAGGACAT
ACCCACCGGTTCTGCTCGCCGGAGAGGGAGGGGACAACGACTGCGGTGTCCATCACTGGCTGCGCTTGCCACTACCATCG
CTGGTCTCGTGGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis