Browse Element(s) Details


Os.50454.1.S1_x_at

Description gb:AK063387.1
DB_XREF= gi:32973405
TID=Os.50454.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G10, full insert sequence.
FL= gb:AK063387.1 gb:AK110849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2823411/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed
LOC_Os04g28260OsAffx.26199.1.S1_x_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.26199.1.S1_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.2413.1.S1_x_at7/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.11796.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.28358.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28270OsAffx.26200.1.S1_at11/114+16526236..16526750hypothetical protein
LOC_Os04g28270Os.9328.1.S1_at1/114+16526236..16526750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50454.1.S1_x_at--462--5291Chr04:16499616..16499640 (25 bp)
GAATGGCCGTGAGCATTCACACATA
LOC_Os04g28234
Os.50454.1.S1_x_at--952--3571Chr04:16499637..16499661 (25 bp)
CATATGCTACTGTTCTTGGAGGACT
LOC_Os04g28234
Os.50454.1.S1_x_at--766--9531Chr04:16499816..16499840 (25 bp)
TCTACCTATGGGTTGGTGCCTACTA
LOC_Os04g28234
Os.50454.1.S1_x_at--968--6611Chr04:16499827..16499851 (25 bp)
GTTGGTGCCTACTATACTTACCTAT
LOC_Os04g28234
Os.50454.1.S1_x_at--366--7011Chr04:16499934..16499958 (25 bp)
GTACTCCTGACTCTCGCATATTAAA
LOC_Os04g28234
Os.50454.1.S1_x_at--432--4391Chr04:16499996..16500020 (25 bp)
GCCAAGGCTGGAAATTATTTGTCTA
LOC_Os04g28234
Os.50454.1.S1_x_at--1063--5311Chr04:16500031..16500055 (25 bp)
GAAGGGTATCTTGCCTGAAGCTACA
LOC_Os04g28234
Os.50454.1.S1_x_at--984--411Chr04:16500038..16500062 (25 bp)
ATCTTGCCTGAAGCTACAACCACTT
LOC_Os04g28234
Os.50454.1.S1_x_at--644--1691Chr04:16500056..16500080 (25 bp)
ACCACTTCCTTGTTAATTTATCTAT
LOC_Os04g28234
Os.50454.1.S1_x_at--811--3151Chr04:16500114..16500138 (25 bp)
AATTGCTCCCTGAAAAGTATCGTTT
LOC_Os04g28234
Os.50454.1.S1_x_at--206--6911Chr04:16500130..16500154 (25 bp)
GTATCGTTTTCTAAGGGAGCAAGCT
LOC_Os04g28234
Target Sequence 
GAATGGCCGTGAGCATTCACACATATGCTACTGTTCTTGGAGGACTTTGTAGAAATAACTGCACCGATGAAGCTAACATG
CTGTTGGAGAAATTGTTTTCTATGAATGTTAAGTTTGATATCCTTACTTTCAATATTGTGATTAGAGCAATGTTCAAAGT
TGGCAGAAGGCAAGAAGCTAAGGAATTGTTTGCTGCTATCTCTACCTATGGGTTGGTGCCTACTATACTTACCTATAGGG
TGATGATAACAAATCTTATAAAAGAGGAATCATTCGAAGATGCTGACAATCTTTTTTCATCAATGGAGAAGAGTAGCTGT
ACTCCTGACTCTCGCATATTAAATGAGATCATTAGAATGTTACTCAATAAAGGTGAGGTTGCCAAGGCTGGAAATTATTT
GTCTAAAATTGATAAGAAGGGTATCTTGCCTGAAGCTACAACCACTTCCTTGTTAATTTATCTATTTTCAGTGAATGGGA
AATATCGAGAATACATAAAATTGCTCCCTGAAAAGTATCGTTTTCTAAGGGAGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50454.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis