Browse Element(s) Details


Os.50454.1.S2_at

Description gb:AK110849.1
DB_XREF= gi:32996058
TID=Os.50454.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C03, full insert sequence.
FL= gb:AK063387.1 gb:AK110849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2823411/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g303105/11Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os09g045502/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed
LOC_Os04g28260OsAffx.26199.1.S1_x_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.26199.1.S1_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.2413.1.S1_x_at7/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.11796.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.28358.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28270OsAffx.26200.1.S1_at11/114+16526236..16526750hypothetical protein
LOC_Os04g28270Os.9328.1.S1_at1/114+16526236..16526750hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016925biological_processprotein sumoylation
GO:0003824molecular_functioncatalytic activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50454.1.S2_at--531--7158Chr09:2428985..2429009 (25 bp)
GTCTTTTGGCTTTCCATGTTCCTGT
LOC_Os09g04550
Os.50454.1.S2_at--712--9276Chr09:2429004..2429028 (25 bp)
TCCTGTCTTTTGGTTTTCCCTGTAT
LOC_Os09g04550
Os.50454.1.S2_at--806--231Chr04:16500569..16500593 (25 bp)
ATATATTTGGGCTATTGCTCTCTGA
LOC_Os04g28234
Os.50454.1.S2_at--1025--6893Chr05:7085321..7085346 (25 bp)
GTATCAGAGCAGGTTTAGACTTCTC
NONE
Os.50454.1.S2_at--781--7873Chr09:2424052..2424076 (25 bp)
GGTTTAGACTTCTCATCTTCTTAGA
NONE
Os.50454.1.S2_at--470--10551Chr04:16500639..16500663 (25 bp)
TTCTTAGAATTTTCTCTCTCGACTT
LOC_Os04g28234
Os.50454.1.S2_at--249--9512Chr04:16500655..16500679 (25 bp)
TCTCGACTTCTCCATGATTTTCTTT
LOC_Os04g28234
Os.50454.1.S2_at--816--1674Chr09:2424121..2424144 (24 bp)
AGCCTCTTCATCTTGAAGCCATGAT
NONE
Os.50454.1.S2_at--195--1191Chr04:16500729..16500753 (25 bp)
AGTATGGTGTCGCTGAGAATCGTCC
LOC_Os04g28234
Os.50454.1.S2_at--655--8711Chr04:16500736..16500760 (25 bp)
TGTCGCTGAGAATCGTCCATCTCTG
LOC_Os04g28234
Os.50454.1.S2_at--936--9171Chr04:16501045..16501069 (25 bp)
TGCCTGGGTCGCTCGGTGCCTGTTT
LOC_Os04g28234
Target Sequence 
GTCTTTTGGCTTTCCATGTTCCTGTCTTTTGGTTTTCCCTGTATTTGTATATATATTTGGGCTATTGCTCTCTGATGAAT
GTTCATAACATGGTATCAGAGCAGGTTTAGACTTCTCATCTTCTTAGAATTTTCTCTCTCGACTTCTCCATGATTTTCTT
TGAGGATTATCAGCCTCTTCATCTTGAAGCCATGATGTTCCTCTTGATCTAGTATGGTGTCGCTGAGAATCGTCCATCTC
TGCTCCCCAACGTCGTCAATTTCTTCAGAACAGTGTAGAGGGCTGGCGGTTGTCCTCATCACCGGCTGTCGTCGCTTCTC
GTCGCTGGCCGCCGTCGCTCCTCGTCGCGGGCCTCTGGCCGCCGTCGCTCGTCGTCGCGGGCCTCCAGCCACCGCCGCCG
CTCGTCGCGGGCCTCCGGCCACCGTCGCCCCTCGTCGCGGGCCTCCGGCCGCCGTCACCCCTGGTCGCGGGCGCCTCCAC
CTGGGTTGTAGGGCGCCGTCACCTGGGTCGCCACCTTCCCCGGCGTTGCCTGGGTCGCTCGGTGCCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50454.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis