Browse Element(s) Details


Os.11796.1.S1_at

Description gb:AK121065.1
DB_XREF= gi:37990688
TID=Os.11796.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059L16, full insert sequence.
FL= gb:AK121065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3657011/11expressed protein
LOC_Os02g465201/11Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os04g282601/11Kinesin-related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36570Os.11796.1.S1_at11/114+21872547..21874694expressed protein
LOC_Os04g36580OsAffx.8864.1.S1_at8/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36580Os.46273.1.S1_at4/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36590Os.53871.1.S1_at10/114+21887649..21890405transposon protein, putative, unclassified, expressed
LOC_Os04g36600Os.55388.1.S1_at11/114+21891458..21892127expressed protein
LOC_Os04g36610OsAffx.14171.1.S1_at11/114+21894524..21896877Endoglucanase 1 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003777molecular_functionmicrotubule motor activity
GO:0008237molecular_functionmetallopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11796.1.S1_at--67--10211Chr04:21874236..21874260 (25 bp)
TATTTGGTCATGTCCTTTTTCTTGC
LOC_Os04g36570
Os.11796.1.S1_at--447--8711Chr04:21874246..21874270 (25 bp)
TGTCCTTTTTCTTGCGATCATGATG
LOC_Os04g36570
Os.11796.1.S1_at--1010--6431Chr04:21874261..21874285 (25 bp)
GATCATGATGCTCTATCTTATCTTG
LOC_Os04g36570
Os.11796.1.S1_at--1--452Chr04:21874275..21874299 (25 bp)
ATCTTATCTTGTTTATGTGAGCTGA
LOC_Os04g36570
Os.11796.1.S1_at--921--1571Chr04:21874294..21874318 (25 bp)
AGCTGATAATTTTTCCAAGTGGGTT
LOC_Os04g36570
Os.11796.1.S1_at--276--4391Chr04:21874308..21874332 (25 bp)
CCAAGTGGGTTTTCCACTTCACCTG
LOC_Os04g36570
Os.11796.1.S1_at--680--2052Chr04:21874323..21874347 (25 bp)
ACTTCACCTGTCTGCATCTTATTTA
LOC_Os04g36570
Os.11796.1.S1_at--918--9051Chr04:21874382..21874406 (25 bp)
TGCTAAATGTATAACTTCCCTCCTC
LOC_Os04g36570
Os.11796.1.S1_at--565--6132Chr08:3932060..3932084 (25 bp)
GAGGGCAGCGGCACAAATCCTCCAT
NONE
Os.11796.1.S1_at--1138--1671Chr04:21874516..21874540 (25 bp)
AGCCTTGAAGGCACATTTGGGATAG
LOC_Os04g36570
Os.11796.1.S1_at--272--7871Chr04:21874580..21874604 (25 bp)
GGTATTATCCCATGATTTTTGTTGC
LOC_Os04g36570
Target Sequence 
TATTTGGTCATGTCCTTTTTCTTGCGATCATGATGCTCTATCTTATCTTGTTTATGTGAGCTGATAATTTTTCCAAGTGG
GTTTTCCACTTCACCTGTCTGCATCTTATTTATAGTTTATTTCATTATGCTGAAGCATACGCCAAATGCTAAATGTATAA
CTTCCCTCCTCTCTCTCTCCACCTCGCCTCTATTTTCCTTCTCTCCCCCGAGGGCAGCGGCACAAATCCTCCATCCCGAA
TCATCCCNATGCCCGAGGCTGNGTTCGGGGGTTNGCTTGAAGCCTTGAAGGCACATTTGGGATAGTTTAGGTATCGTCTG
TNGTCATCCATATTTTGTTGTGATGGTATTATCCCATGATTTTTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis