Browse Element(s) Details


Os.53871.1.S1_at

Description gb:AK100533.1
DB_XREF= gi:32985742
TID=Os.53871.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101L24, full insert sequence.
FL= gb:AK100533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3659010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36570Os.11796.1.S1_at11/114+21872547..21874694expressed protein
LOC_Os04g36580OsAffx.8864.1.S1_at8/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36580Os.46273.1.S1_at4/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36590Os.53871.1.S1_at10/114+21887649..21890405transposon protein, putative, unclassified, expressed
LOC_Os04g36600Os.55388.1.S1_at11/114+21891458..21892127expressed protein
LOC_Os04g36610OsAffx.14171.1.S1_at11/114+21894524..21896877Endoglucanase 1 precursor, putative
LOC_Os04g36620Os.18761.1.S1_at11/114+21900287..21905858hydrolase, alpha/beta fold family protein, expressed
LOC_Os04g36630Os.53669.1.S1_at11/114+21907685..21910080expressed protein
LOC_Os04g36640NANA4+21912920..21913474AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53871.1.S1_at--823--2851Chr04:21889818..21889842 (25 bp)
AAGGGAATGTCTTTCTGGTCCGTCA
LOC_Os04g36590
Os.53871.1.S1_at--1149--6171NONE
GAGGAGCTAATTTCTTGCAGCAGCA
NONE
Os.53871.1.S1_at--414--271Chr04:21889917..21889941 (25 bp)
ATATGTTTGAGTCTGCAGGGATCCT
LOC_Os04g36590
Os.53871.1.S1_at--879--2491Chr04:21889976..21890000 (25 bp)
AACTACTTTCAGATCCCGGACCATT
LOC_Os04g36590
Os.53871.1.S1_at--919--2971Chr04:21890051..21890075 (25 bp)
AATGGTGCTTATTTCCACGAGTCGC
LOC_Os04g36590
Os.53871.1.S1_at--1130--911Chr04:21890094..21890118 (25 bp)
AGGCATTGCAGTCCATGGTGTCAGC
LOC_Os04g36590
Os.53871.1.S1_at--817--5871Chr04:21890125..21890149 (25 bp)
GAGCGAAGCTTCCAAATCTACCGAG
LOC_Os04g36590
Os.53871.1.S1_at--852--4271Chr04:21890182..21890206 (25 bp)
CCTGTTGTCGCGGATGAGGCAGCAA
LOC_Os04g36590
Os.53871.1.S1_at--586--1491Chr04:21890202..21890226 (25 bp)
AGCAACCTGTTGTCATGCACGTTTC
LOC_Os04g36590
Os.53871.1.S1_at--745--7351Chr04:21890282..21890306 (25 bp)
GTGACGACTGACAGCTTTAGACCTG
LOC_Os04g36590
Os.53871.1.S1_at--1133--7731Chr04:21890314..21890338 (25 bp)
GGTGTAATGCCGATGCTGTTTTCCC
LOC_Os04g36590
Target Sequence 
AAGGGAATGTCTTTCTGGTCCGTCATCATACCAAGACAGAAGACGGTGGGTGCAATGTGACATGGAGCCAAAGAGAGGAG
CTAATTTCTTGCAGCAGCAATATGTTTGAGTCTGCAGGGATCCTCTGCCGGCATGGCCTCCGTGTGCTCTCGACCCTCAA
CTACTTTCAGATCCCGGACCATTATCTCCCTCCTCGATGGCGTAGAACCTGGCCATCACCTTCCAAGGCCTTGAATGGTG
CTTATTTCCACGAGTCGCCTGAGATTGGGAGAGTGAAGGCATTGCAGTCCATGGTGTCAGCTCTGGTGAGCGAAGCTTCC
AAATCTACCGAGCGGATGGATATCGCGACGCGGGAGGTCTCTGCCCTGTTGTCGCGGATGAGGCAGCAACCTGTTGTCAT
GCACGTTTCAGGTGATGGTGTTCACAAGTAGGGGTAGCTAAACCGTGCACTCCTCCATGAGTGAGTGACGACTGACAGCT
TTAGACCTGTTAGGCTGGTGTAATGCCGATGCTGTTTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis