Browse Element(s) Details


Os.53669.1.S1_at

Description gb:AK073841.1
DB_XREF= gi:32983864
TID=Os.53669.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070F18, full insert sequence.
FL= gb:AK073841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3663011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36580OsAffx.8864.1.S1_at8/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36580Os.46273.1.S1_at4/114+21880103..21884939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g36590Os.53871.1.S1_at10/114+21887649..21890405transposon protein, putative, unclassified, expressed
LOC_Os04g36600Os.55388.1.S1_at11/114+21891458..21892127expressed protein
LOC_Os04g36610OsAffx.14171.1.S1_at11/114+21894524..21896877Endoglucanase 1 precursor, putative
LOC_Os04g36620Os.18761.1.S1_at11/114+21900287..21905858hydrolase, alpha/beta fold family protein, expressed
LOC_Os04g36630Os.53669.1.S1_at11/114+21907685..21910080expressed protein
LOC_Os04g36640NANA4+21912920..21913474AP2 domain containing protein
LOC_Os04g36650OsAffx.26353.1.S1_at11/114+21924686..21925278Zinc finger, C2H2 type family protein, expressed
LOC_Os04g36660Os.18076.1.S1_at11/114+21930703..21936266Calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53669.1.S1_at--837--31Chr04:21908252..21908276 (25 bp)
ATTTCTTGGGACGTTCTACACCGTG
LOC_Os04g36630
Os.53669.1.S1_at--631--3331Chr04:21908234..21908258 (25 bp)
CACCGTGTTAACTCTTTATGTCATA
LOC_Os04g36630
Os.53669.1.S1_at--534--251Chr04:21908151..21908175 (25 bp)
ATATGCTAATTTTTGCCACCGGAAT
LOC_Os04g36630
Os.53669.1.S1_at--855--5231Chr04:21908130..21908154 (25 bp)
GAATACTGCTTCCTCGAGCTATGTT
LOC_Os04g36630
Os.53669.1.S1_at--526--9511Chr04:21908097..21908121 (25 bp)
TCTCGGTTCTTCCATGGCCAGGTGA
LOC_Os04g36630
Os.53669.1.S1_at--103--1151Chr04:21908069..21908093 (25 bp)
AGTCCATGAATCTCTCGTGTTTGTC
LOC_Os04g36630
Os.53669.1.S1_at--1065--10711Chr04:21908025..21908049 (25 bp)
TTGCTGCTATGCTTGGTATTGTTAT
LOC_Os04g36630
Os.53669.1.S1_at--118--9311Chr04:21907989..21908013 (25 bp)
TCCCAGTTGCGGAAACCTTTGAAGT
LOC_Os04g36630
Os.53669.1.S1_at--1043--2451Chr04:21907937..21907961 (25 bp)
AACAAGTCATTCCATTGCCCTGTGA
LOC_Os04g36630
Os.53669.1.S1_at--595--6231Chr04:21907906..21907930 (25 bp)
GATGGCTGAGCCTTATGATTTGACA
LOC_Os04g36630
Os.53669.1.S1_at--401--6551Chr04:21907771..21907795 (25 bp)
GATTAGGTTATCGTTCTCCTTTCTT
LOC_Os04g36630
Target Sequence 
ATTTCTTGGGACGTTCTACACCGTGTTAACTCTTTATGTCATATTTGTTGGAGGGCAGATATTATCTTTAGTGATCAACA
AGGGGCTTCGACGGAGGATATATATGCTAATTTTTGCCACCGGAATACTGCTTCCTCGAGCTATGTTTCTTGGATTCTCG
GTTCTTCCATGGCCAGGTGAAATAGTCCATGAATCTCTCGTGTTTGTCTCCTTCCTTGTCCTGATGATTGCTGCTATGCT
TGGTATTGTTATTCTGGTGTATTTCCCAGTTGCGGAAACCTTTGAAGTAAGAAACCAAGAGCATATTGAGCTGCAAACAA
GTCATTCCATTGCCCTGTGAATCTTTGATGGCTGAGCCTTATGATTTGACATATGTTTCAGCTTTTCATTCTAAGGACAA
GACATTGGGAGATGCTTCAGATTTATTATGTGGTTGTTGCTGAGAGCTATCTCCCCAATTTTGTAAACATAGAACAAATT
AGATTAGGTTATCGTTCTCCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis