Browse Element(s) Details


Os.18076.1.S1_at

Description gb:AK072545.1
DB_XREF= gi:32982568
TID=Os.18076.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131N23, full insert sequence.
FL= gb:AK072545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3666011/11Calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36620Os.18761.1.S1_at11/114+21900287..21905858hydrolase, alpha/beta fold family protein, expressed
LOC_Os04g36630Os.53669.1.S1_at11/114+21907685..21910080expressed protein
LOC_Os04g36640NANA4+21912920..21913474AP2 domain containing protein
LOC_Os04g36650OsAffx.26353.1.S1_at11/114+21924686..21925278Zinc finger, C2H2 type family protein, expressed
LOC_Os04g36660Os.18076.1.S1_at11/114+21930703..21936266Calmodulin-binding protein, putative, expressed
LOC_Os04g36670Os.54229.1.S1_at11/114+21938223..21940158expressed protein
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18076.1.S1_at--215--6151Chr04:21935873..21935897 (25 bp)
GAGGTCGTCCGGAGTGTTCATCTTA
LOC_Os04g36660
Os.18076.1.S1_at--9--10431Chr04:21935895..21935919 (25 bp)
TTATGGACCATGAGGCCTGGCCAGT
LOC_Os04g36660
Os.18076.1.S1_at--302--8531Chr04:21935921..21935945 (25 bp)
TGGACAGATGGTAACACGCCTCTCT
LOC_Os04g36660
Os.18076.1.S1_at--298--3771Chr04:21935940..21935964 (25 bp)
CTCTCTTGGCTGGTCTTGTACAATA
LOC_Os04g36660
Os.18076.1.S1_at--1142--5571Chr04:21935996..21936020 (25 bp)
GAAATGGGCTCAGCGATGCACCAGG
LOC_Os04g36660
Os.18076.1.S1_at--11--8011Chr04:21936024..21936048 (25 bp)
GGATGGTCCACATGACGAGCTTATT
LOC_Os04g36660
Os.18076.1.S1_at--724--8131Chr04:21936059..21936083 (25 bp)
GGACACCCGTTGTTTGTATAGCTGT
LOC_Os04g36660
Os.18076.1.S1_at--1060--9611Chr04:21936095..21936119 (25 bp)
TATGTAAGTTTTGCTAGTCCGCCCT
LOC_Os04g36660
Os.18076.1.S1_at--938--1131Chr04:21936110..21936134 (25 bp)
AGTCCGCCCTGTTGTATTACATGCA
LOC_Os04g36660
Os.18076.1.S1_at--1019--3491Chr04:21936129..21936153 (25 bp)
CATGCAATCCTTGATCCGAACTGTG
LOC_Os04g36660
Os.18076.1.S1_at--242--7411Chr04:21936187..21936211 (25 bp)
GTGATAGGAGGCATGTCGCCATCCT
LOC_Os04g36660
Target Sequence 
GAGGTCGTCCGGAGTGTTCATCTTATGGACCATGAGGCCTGGCCAGTCTGGACAGATGGTAACACGCCTCTCTTGGCTGG
TCTTGTACAATAGTACTGTTGATATTTATGTTTACTGATGAAAGAAATGGGCTCAGCGATGCACCAGGCCAGGATGGTCC
ACATGACGAGCTTATTAGTATGAAATGGACACCCGTTGTTTGTATAGCTGTTTGATGGACATTATGTAAGTTTTGCTAGT
CCGCCCTGTTGTATTACATGCAATCCTTGATCCGAACTGTGCAAATTTATTTGTTGGAGGTTTTGGGANCACAAGTGATA
GGAGGCATGTCGCCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis