Browse Element(s) Details


OsAffx.26354.1.S1_at

Description tigr:9632.m03492
TID=OsAffx.26354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3669011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36650OsAffx.26353.1.S1_at11/114+21924686..21925278Zinc finger, C2H2 type family protein, expressed
LOC_Os04g36660Os.18076.1.S1_at11/114+21930703..21936266Calmodulin-binding protein, putative, expressed
LOC_Os04g36670Os.54229.1.S1_at11/114+21938223..21940158expressed protein
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26354.1.S1_at--910--7571Chr04:21949394..21949418 (25 bp)
GGGCGTGGCTTACTTACCAGCTTGC
LOC_Os04g36690
OsAffx.26354.1.S1_at--430--4671Chr04:21949392..21949416 (25 bp)
GCGTGGCTTACTTACCAGCTTGCTT
LOC_Os04g36690
OsAffx.26354.1.S1_at--744--7531Chr04:21949390..21949414 (25 bp)
GTGGCTTACTTACCAGCTTGCTTGC
LOC_Os04g36690
OsAffx.26354.1.S1_at--691--8271Chr04:21949388..21949412 (25 bp)
GGCTTACTTACCAGCTTGCTTGCGG
LOC_Os04g36690
OsAffx.26354.1.S1_at--720--10471Chr04:21949385..21949409 (25 bp)
TTACTTACCAGCTTGCTTGCGGCGG
LOC_Os04g36690
OsAffx.26354.1.S1_at--363--3811Chr04:21949347..21949371 (25 bp)
CTCCGGCGGAGGGAGAGTTGCGGCG
LOC_Os04g36690
OsAffx.26354.1.S1_at--196--8051Chr04:21949287..21949311 (25 bp)
GGAGAGAGTGAGAGCTGCGCGAGGG
LOC_Os04g36690
OsAffx.26354.1.S1_at--828--7971Chr04:21949263..21949287 (25 bp)
GGATCGCCTGATTGCGGCTTTCGGC
LOC_Os04g36690
OsAffx.26354.1.S1_at--185--6391Chr04:21949262..21949286 (25 bp)
GATCGCCTGATTGCGGCTTTCGGCG
LOC_Os04g36690
OsAffx.26354.1.S1_at--796--6552Chr04:21949254..21949278 (25 bp)
GATTGCGGCTTTCGGCGGCGTGCGA
LOC_Os04g36690
OsAffx.26354.1.S1_at--425--11Chr04:21949209..21949233 (25 bp)
AGGCGAAGTCGGAGGTAGCGAGGCA
LOC_Os04g36690
Target Sequence 
GGGCGTGGCTTACTTACCAGCTTGCTTGCGGCGGACGCCGACGCCGACTCCGGCGGAGGGAGAGTTGCGGCGGCGAAGGC
GAAGGCGAAGGCGAAGGCGGCGGCGGTGGAGAGAGTGAGAGCTGCGCGAGGGGATCGCCTGATTGCGGCTTTCGGCGGCG
TGCGAGATACTTGGGGTTGGGGACGAGGCGAAGTCGGAGGTAGCGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis