Browse Element(s) Details


OsAffx.26353.1.S1_at

Description tigr:9632.m03488
TID=OsAffx.26353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3665011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36620Os.18761.1.S1_at11/114+21900287..21905858hydrolase, alpha/beta fold family protein, expressed
LOC_Os04g36630Os.53669.1.S1_at11/114+21907685..21910080expressed protein
LOC_Os04g36640NANA4+21912920..21913474AP2 domain containing protein
LOC_Os04g36650OsAffx.26353.1.S1_at11/114+21924686..21925278Zinc finger, C2H2 type family protein, expressed
LOC_Os04g36660Os.18076.1.S1_at11/114+21930703..21936266Calmodulin-binding protein, putative, expressed
LOC_Os04g36670Os.54229.1.S1_at11/114+21938223..21940158expressed protein
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26353.1.S1_at--137--951Chr04:21924794..21924818 (25 bp)
AGGAAGGGCTGACGCTGAGCCTGTC
LOC_Os04g36650
OsAffx.26353.1.S1_at--42--9091Chr04:21924862..21924886 (25 bp)
TGCTACTGCCCGAGGAAGTTCCGGA
LOC_Os04g36650
OsAffx.26353.1.S1_at--869--9911Chr04:21924865..21924889 (25 bp)
TACTGCCCGAGGAAGTTCCGGAGCT
LOC_Os04g36650
OsAffx.26353.1.S1_at--812--4531Chr04:21924869..21924893 (25 bp)
GCCCGAGGAAGTTCCGGAGCTCGCA
LOC_Os04g36650
OsAffx.26353.1.S1_at--374--3351Chr04:21925171..21925195 (25 bp)
CACCGCCTGATGCAGGGTGGTTACT
LOC_Os04g36650
OsAffx.26353.1.S1_at--1008--4471Chr04:21925175..21925199 (25 bp)
GCCTGATGCAGGGTGGTTACTCTTC
LOC_Os04g36650
OsAffx.26353.1.S1_at--305--3871Chr04:21925177..21925201 (25 bp)
CTGATGCAGGGTGGTTACTCTTCCG
LOC_Os04g36650
OsAffx.26353.1.S1_at--460--6311Chr04:21925179..21925203 (25 bp)
GATGCAGGGTGGTTACTCTTCCGGC
LOC_Os04g36650
OsAffx.26353.1.S1_at--1025--631Chr04:21925180..21925204 (25 bp)
ATGCAGGGTGGTTACTCTTCCGGCG
LOC_Os04g36650
OsAffx.26353.1.S1_at--32--3471Chr04:21925183..21925207 (25 bp)
CAGGGTGGTTACTCTTCCGGCGGCT
LOC_Os04g36650
OsAffx.26353.1.S1_at--189--7511Chr04:21925187..21925211 (25 bp)
GTGGTTACTCTTCCGGCGGCTCGTC
LOC_Os04g36650
Target Sequence 
AGGAAGGGCTGACGCTGAGCCTGTCGCTGCAGCCGTCGCCGCCGAGGTTCCAGGCGCTCTTCTCCTGCTGCTACTGCCCG
AGGAAGTTCCGGAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGCTGCAGCGCAACCTCGCCAGGCGGGGCCG
CGAGGCCGCCGCCTCTCTCGCCGCCGCCGCCGCCGCGGCGGCCGCGGCGGCCGCTTCCTCGGGGGATCAGCAGCAGCAAG
GCAGGACGACGGCGGCGGCGGCGGCGGTGCTTGCCGGCGGCGAGAGCGCGCCGCCTGCTGCTGCTCGCGCCGCCGCGGAT
CTCGACGGCGCCGGCGTGTGGGGAGGAGCTGGGATGAGGGGCCGGCCGGCGCACCACCACCGCCTGATGCAGGGTGGTTA
CTCTTCCGGCGGCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis