Browse Element(s) Details


Os.15234.1.S1_at

Description gb:AK064788.1
DB_XREF= gi:32974806
TID=Os.15234.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN6 mRNA for 26S proteasome regulatory particle non-ATPase subunit6, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B21, full insert sequence.
FL= gb:AK061617.1 gb:AK064788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3670011/11PCI domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36650OsAffx.26353.1.S1_at11/114+21924686..21925278Zinc finger, C2H2 type family protein, expressed
LOC_Os04g36660Os.18076.1.S1_at11/114+21930703..21936266Calmodulin-binding protein, putative, expressed
LOC_Os04g36670Os.54229.1.S1_at11/114+21938223..21940158expressed protein
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15234.1.S1_at--395--8291Chr04:21951656..21951680 (25 bp)
GGCTTAAATGCCAAAATGTCTTTAC
LOC_Os04g36700
Os.15234.1.S1_at--988--7131Chr04:21951673..21951697 (25 bp)
GTCTTTACAGTCATGTGCTAGTTAT
LOC_Os04g36700
Os.15234.1.S1_at--183--7131Chr04:21951682..21951706 (25 bp)
GTCATGTGCTAGTTATGTTGGCTAT
LOC_Os04g36700
Os.15234.1.S1_at--183--4871Chr04:21951689..21951713 (25 bp)
GCTAGTTATGTTGGCTATTATTTCA
LOC_Os04g36700
Os.15234.1.S1_at--1098--8291Chr04:21951701..21951725 (25 bp)
GGCTATTATTTCATATTGCTTCAGT
LOC_Os04g36700
Os.15234.1.S1_at--467--171Chr04:21951766..21951790 (25 bp)
ATTTTGTTCTGCATGTTGGTCTCTC
LOC_Os04g36700
Os.15234.1.S1_at--180--4991Chr04:21951776..21951800 (25 bp)
GCATGTTGGTCTCTCCTAGCTAAAA
LOC_Os04g36700
Os.15234.1.S1_at--210--8811Chr04:21951779..21951803 (25 bp)
TGTTGGTCTCTCCTAGCTAAAAAAG
LOC_Os04g36700
Os.15234.1.S1_at--1100--8571Chr04:21951782..21951806 (25 bp)
TGGTCTCTCCTAGCTAAAAAAGGTA
LOC_Os04g36700
Os.15234.1.S1_at--785--2311Chr04:21951800..21951824 (25 bp)
AAAGGTACCCTGTCTTGAATGCGAA
LOC_Os04g36700
Os.15234.1.S1_at--98--6991Chr04:21951804..21951828 (25 bp)
GTACCCTGTCTTGAATGCGAACAAA
LOC_Os04g36700
Target Sequence 
GGCTTAAATGCCAAAATGTCTTTACAGTCATGTGCTAGTTATGTTGGCTATTATTTCATATTGCTTCAGTTCCNGTTGGT
CTCCACAGACATTTAATCCTGCATATTGACATTTTGTTCTGCATGTTGGTCTCTCCTAGCTAAAAAAGGTACCCTGTCTT
GAATGCGAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis