Browse Element(s) Details


Os.54520.1.S1_at

Description gb:AK105506.1
DB_XREF= gi:32990715
TID=Os.54520.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-D12, full insert sequence.
FL= gb:AK105506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3674011/11Potassium channel SKOR, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0015271molecular_functionoutward rectifier potassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54520.1.S1_at--1109--8111Chr04:21973716..21973949 (25 bp)
GGACTGCATTGCATATTGCTGCACT
LOC_Os04g36740
Os.54520.1.S1_at--77--10811Chr04:21973674..21973698 (25 bp)
TTGTCAGGTTCCTTATTCAACGAGG
LOC_Os04g36740
Os.54520.1.S1_at--647--991Chr04:21973520..21973544 (25 bp)
AGGTTTGGAAACTCACCACTGCTGC
LOC_Os04g36740
Os.54520.1.S1_at--328--1951Chr04:21973447..21973471 (25 bp)
ACGGCGCGATCCTGAACCTGGAGGA
LOC_Os04g36740
Os.54520.1.S1_at--440--8111Chr04:21973425..21973449 (25 bp)
GGACGCTGGAGGTTACCTCTGCAGA
LOC_Os04g36740
Os.54520.1.S1_at--191--1451Chr04:21973369..21973393 (25 bp)
AGAAGCTGCTCAGATTCGGGATCAG
LOC_Os04g36740
Os.54520.1.S1_at--229--7671Chr04:21973352..21973376 (25 bp)
GGGATCAGCCCAAACTGCAGGAACT
LOC_Os04g36740
Os.54520.1.S1_at--154--8171Chr04:21973333..21973357 (25 bp)
GGAACTACGATCAGAGGACGCCGCT
LOC_Os04g36740
Os.54520.1.S1_at--1008--5531Chr04:21973118..21973142 (25 bp)
GAAACACGCCGCTTGACGAAGGGAG
LOC_Os04g36740
Os.54520.1.S1_at--328--2371Chr04:21973080..21973104 (25 bp)
AAACCACTGGTCAGGATACTGGAGC
LOC_Os04g36740
Os.54520.1.S1_at--947--4991Chr04:21973057..21973081 (25 bp)
GCAGGCTAGAACTGTTGCGACTAAT
LOC_Os04g36740
Target Sequence 
GGACTGCATTGCATATTGCTGCACTGAGAGGATACGAAAATATTGTCAGGTTCCTTATTCAACGAGGAGCGAATGTCAAC
AGCATAGACAGGTTTGGAAACTCACCACTGCTGCAGGCAGTAAAATCAGGCCATGACAGGATCACGTCGCTCCTCGTGGA
GCACGGCGCGATCCTGAACCTGGAGGACGCTGGAGGTTACCTCTGCAGAGTAGTCAGGGGTGGCAGGATCGATCTGCTGA
AGAAGCTGCTCAGATTCGGGATCAGCCCAAACTGCAGGAACTACGATCAGAGGACGCCGCTCCACATCGCTGCTGCCGAG
GGCCTGCACCTTGTTGCCAGCACGCTGATAGAATCTGGAGCAGACATACAGGCCAAAGATAGGTGGGGAAACACGCCGCT
TGACGAAGGGAGACGGTGCAGCAGCAAACCACTGGTCAGGATACTGGAGCAGGCTAGAACTGTTGCGACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis