Browse Element(s) Details


OsAffx.26356.1.S1_at

Description tigr:9632.m03502
TID=OsAffx.26356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=6b-interacting protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3679011/116b-interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed
LOC_Os04g36820NANA4+22011012..22011497hypothetical protein
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26356.1.S1_at--124--6111Chr04:21994694..21994718 (25 bp)
GAGTCGCAGCGCGTGCAGTTCTTCC
LOC_Os04g36790
OsAffx.26356.1.S1_at--273--1231Chr04:21994710..21994734 (25 bp)
AGTTCTTCCTCAACACGCAGATGGA
LOC_Os04g36790
OsAffx.26356.1.S1_at--806--2171Chr04:21994722..21994746 (25 bp)
ACACGCAGATGGAACTCTCGCAGGT
LOC_Os04g36790
OsAffx.26356.1.S1_at--651--5471Chr04:21994733..21994757 (25 bp)
GAACTCTCGCAGGTGAAGGACCACT
LOC_Os04g36790
OsAffx.26356.1.S1_at--50--8411Chr04:21994802..21994826 (25 bp)
GGCGCCGGTGGCACCTCTAGAAGAA
LOC_Os04g36790
OsAffx.26356.1.S1_at--380--8511Chr04:21994810..21994834 (25 bp)
TGGCACCTCTAGAAGAATGGCGTCG
LOC_Os04g36790
OsAffx.26356.1.S1_at--561--7171Chr04:21994831..21994855 (25 bp)
GTCGGTTAACGACGCTAGCGCCAGT
LOC_Os04g36790
OsAffx.26356.1.S1_at--300--5791Chr04:21994841..21994865 (25 bp)
GACGCTAGCGCCAGTGGAAATTACC
LOC_Os04g36790
OsAffx.26356.1.S1_at--1040--6151Chr04:21994854..21994878 (25 bp)
GTGGAAATTACCACCGCCGGTATCG
LOC_Os04g36790
OsAffx.26356.1.S1_at--875--4531Chr04:21994929..21994953 (25 bp)
GCCCGCACTATCAGTACCATGAGAA
LOC_Os04g36790
OsAffx.26356.1.S1_at--824--3511Chr04:21994946..21994970 (25 bp)
CATGAGAATAACATCGCCGTCGCTG
LOC_Os04g36790
Target Sequence 
GAGTCGCAGCGCGTGCAGTTCTTCCTCAACACGCAGATGGAACTCTCGCAGGTGAAGGACCACTCCTCCTCTCCCGCCAA
CGCCGCCGCGCCGCCTGGTGCCACCGGCGGCGCCGGTGGCACCTCTAGAAGAATGGCGTCGGTTAACGACGCTAGCGCCA
GTGGAAATTACCACCGCCGGTATCGCGTCAGCGACGGCGGCAGGCACCGCCACCACCCGCAGCCACCGCCGTCGCGCCCG
CACTATCAGTACCATGAGAATAACATCGCCGTCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis