Browse Element(s) Details


Os.47427.1.S1_at

Description gb:AK108515.1
DB_XREF= gi:32993724
TID=Os.47427.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A09, full insert sequence.
FL= gb:AK108515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3678011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed
LOC_Os04g36820NANA4+22011012..22011497hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47427.1.S1_at--893--6991Chr04:21989176..21989200 (25 bp)
GTACGTGATGAGCTTGATAACCTAG
LOC_Os04g36780
Os.47427.1.S1_at--117--10251Chr04:21989757..21989781 (25 bp)
TTTCCATGTGTGTGTCAGTGACCAA
LOC_Os04g36780
Os.47427.1.S1_at--313--10611Chr04:21990027..21990051 (25 bp)
TTCGAGTTTGACAAGACGACGCCCC
LOC_Os04g36780
Os.47427.1.S1_at--298--8791Chr04:21990150..21990174 (25 bp)
TGTTATCACCGTTGAATGCTGCCAA
LOC_Os04g36780
Os.47427.1.S1_at--89--631Chr04:21990165..21990189 (25 bp)
ATGCTGCCAAAGGACCAAGATGCGT
LOC_Os04g36780
Os.47427.1.S1_at--417--4651Chr04:21990186..21990210 (25 bp)
GCGTCCAGTTCGCATTTCATGCAGA
LOC_Os04g36780
Os.47427.1.S1_at--215--2811Chr04:21990252..21990276 (25 bp)
AAGATCTCTTTAGCTAGTCCTTGGC
LOC_Os04g36780
Os.47427.1.S1_at--44--3791Chr04:21990276..21990300 (25 bp)
CTCGTTGCCATGTTCCTTTTAGTAT
LOC_Os04g36780
Os.47427.1.S1_at--789--4871Chr04:21990333..21990357 (25 bp)
GCTATTGTTATTCCGGAAGCTGCTC
LOC_Os04g36780
Os.47427.1.S1_at--230--5411Chr04:21990348..21990372 (25 bp)
GAAGCTGCTCTCACTTGCAAAGCTG
LOC_Os04g36780
Os.47427.1.S1_at--190--2831Chr04:21990374..21990398 (25 bp)
AAGTTTGCAGCCCAATGCCATTTGG
LOC_Os04g36780
Target Sequence 
GTACGTGATGAGCTTGATAACCTAGATAGCCAAAGAGATTCTATAGAACAAAGGAAGGAAGCTCTAAGGAAGATGGAAAA
GGAAATGATGAAAGCACAAAATATGCTTTCCATGTGTGTGTCAGTGACCAAAATCATGCCAAATTTTGAAGACAAGGACA
AGATCTCTGGTTATATTGTTGATAAGAACATGAAGAAACTAGAGAGGTTCGAGTTTGACAAGACGACGCCCCCTGTTGAT
ATCTGCAACAACCTTTGGAAGATGGTTTAGATGTTGCGTGGAGATAACGGTCGTGGACGATGGACCTCCCATCGAACATC
CCTTTTTTTTTGTTATCACCGTTGAATGCTGCCAAAGGACCAAGATGCGTCCAGTTCGCATTTCATGCAGAGATCTACAG
AAGTGCTATCTGTTTGTAGATTTGCTAAGATCAAGATCTCTTTAGCTAGTCCTTGGCTCGTTGCCATGTTCCTTTTAGTA
TGTGTAAGTACTAAGTTGTATAACATTTCACATGCTATTGTTATTCCGGAAGCTGCTCTCACTTGCAAAGCTGCAAGTTT
GCAGCCCAATGCCATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis