Browse Element(s) Details


Os.14145.1.A1_at

Description gb:AK070312.1
DB_XREF= gi:32980336
TID=Os.14145.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.14145 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047G23, full insert sequence.
FL= gb:AK067009.1 gb:AK070312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3672011/11ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os01g669901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36670Os.54229.1.S1_at11/114+21938223..21940158expressed protein
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0015688biological_processiron chelate transport
GO:0016020cellular_componentmembrane
GO:0000293molecular_functionferric-chelate reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14145.1.A1_at--71--3891Chr04:21967049..21967073 (25 bp)
CTGTGGCACCTGTCCGAGAAGCGGA
LOC_Os04g36720
Os.14145.1.A1_at--648--5931Chr04:21967145..21967169 (25 bp)
GAGCAGACAACGAACGGCGCCGACG
LOC_Os04g36720
Os.14145.1.A1_at--249--9191Chr04:21967220..21967375 (25 bp)
TGCCGGCCACAGTTCGAAGCGGAGT
LOC_Os04g36720
Os.14145.1.A1_at--482--4331Chr04:21967226..21967381 (25 bp)
CCACAGTTCGAAGCGGAGTTCGCGG
LOC_Os04g36720
Os.14145.1.A1_at--48--191Chr04:21967532..21967556 (25 bp)
ATTTCAACAGCCACAGCTTCGACCT
LOC_Os04g36720
Os.14145.1.A1_at--177--3311Chr04:21967543..21967567 (25 bp)
CACAGCTTCGACCTGTAGTCTGTAG
LOC_Os04g36720
Os.14145.1.A1_at--986--9451Chr04:21967561..21967585 (25 bp)
TCTGTAGACCAGAGCTAGTACGACA
LOC_Os04g36720
Os.14145.1.A1_at--293--1571Chr04:21967573..21967597 (25 bp)
AGCTAGTACGACACTCTGCGCAGGT
LOC_Os04g36720
Os.14145.1.A1_at--207--2191Chr04:21967583..21967607 (25 bp)
ACACTCTGCGCAGGTGGCGAACATA
LOC_Os04g36720
Os.14145.1.A1_at--812--4572Chr04:21967590..21967614 (25 bp)
GCGCAGGTGGCGAACATATTAATTT
LOC_Os04g36720
Os.14145.1.A1_at--850--6531Chr04:21967660..21967684 (25 bp)
GATTAAAATTATAGCCGAGGCCCTG
LOC_Os04g36720
Target Sequence 
CTGTGGCACCTGTCCGAGAAGCGGAAGGCGGAGGACGACAGGTGGGACGCCGCCGCCGCCGCCGTCCCGCGCGCACAGGA
CGGCGAGGAGGAGGCCGAGCAGACAACGAACGGCGCCGACGCGGCCGACGGCGGCGTCAGCCTCGCCGCGGTGAAGACGA
CGCGGTACGGGTGCCGGCCACAGTTCGAAGCGGAGTTCGCGGCGTTCGCGGAGAAGGCCGGCGGCGGCGCGGCGGACGTG
GGCGTGCTGGTGTGCGGGCCGCCGGGGCTGCAGGCGAGCGTGGCGAGGGAGTGCAGGTCGCACAACCTCGGCCGCCGCGG
CGGGAGGCGCCGCCGCGCCGGCGCCGTCTTCCATTTCAACAGCCACAGCTTCGACCTGTAGTCTGTAGACCAGAGCTAGT
ACGACACTCTGCGCAGGTGGCGAACATATTAATTTTTAATTGATAATAGTAGTTAATATGTACTGTATAAAATAACTAAA
GATTAAAATTATAGCCGAGGCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14145.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis