Browse Element(s) Details


OsAffx.14172.1.S1_at

Description tigr:9632.m03491
TID=OsAffx.14172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=seven transmembrane protein Mlo3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3668011/11Mlo family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36650OsAffx.26353.1.S1_at11/114+21924686..21925278Zinc finger, C2H2 type family protein, expressed
LOC_Os04g36660Os.18076.1.S1_at11/114+21930703..21936266Calmodulin-binding protein, putative, expressed
LOC_Os04g36670Os.54229.1.S1_at11/114+21938223..21940158expressed protein
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0016021cellular_componentintegral to membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14172.1.S1_at--515--7071Chr04:21944291..21944315 (25 bp)
GTAATGATCTTCCTCCTACTAAACA
LOC_Os04g36680
OsAffx.14172.1.S1_at--629--9831Chr04:21944169..21944296 (25 bp)
TAAACATCACTGGTTGGCACTCCTA
LOC_Os04g36680
OsAffx.14172.1.S1_at--819--3311Chr04:21944152..21944176 (25 bp)
CACTCCTACTTCTGGATCTCATTAA
LOC_Os04g36680
OsAffx.14172.1.S1_at--949--131Chr04:21943999..21944156 (25 bp)
ATTAATCCCATTGGTTCTGCTGCTC
LOC_Os04g36680
OsAffx.14172.1.S1_at--493--10591Chr04:21943985..21944007 (23 bp)
TTCTGCTGCTCCTGATCGGAACGAA
LOC_Os04g36680
OsAffx.14172.1.S1_at--609--5411Chr04:21943963..21943987 (25 bp)
GAAGCTGGAGCACATCATCACTCAG
LOC_Os04g36680
OsAffx.14172.1.S1_at--567--7631Chr04:21943898..21943922 (25 bp)
GGGACATAGCCGTGAGCCCGTCAGA
LOC_Os04g36680
OsAffx.14172.1.S1_at--836--4631Chr04:21943806..21943830 (25 bp)
GCGTTCGAGTTTGCGTATTTCATCT
LOC_Os04g36680
OsAffx.14172.1.S1_at--853--8131Chr04:21943242..21943609 (25 bp)
GGACAATGGCAACGTTCGGCTTCAA
LOC_Os04g36680
OsAffx.14172.1.S1_at--164--2131Chr04:21943203..21943227 (25 bp)
ACAGGCTGCCGTACAGAGTGTCAAG
LOC_Os04g36680
OsAffx.14172.1.S1_at--1034--1471Chr04:21943058..21943204 (25 bp)
AGAATTGTCATATGCGTCGTCGTCC
LOC_Os04g36680
Target Sequence 
GTAATGATCTTCCTCCTACTAAACATCACTGGTTGGCACTCCTACTTCTGGATCTCATTAATCCCATTGGTTCTGCTGCT
CCTGATCGGAACGAAGCTGGAGCACATCATCACTCAGCTAGCCTACGAAGTGGCCACGAAGCACACCGCCGTGGAGGGGG
ACATAGCCGTGAGCCCGTCAGACAATCTCTTCTGGTTCCACAGCCCCAGGCTCGTGCTCGCCCTCCTCCGCTTCATCCTG
TTCCAGAACGCGTTCGAGTTTGCGTATTTCATCTGGACAATGGCAACGTTCGGCTTCAACTCCTGCATCATGGACAGGCT
GCCGTACAGAGTGTCAAGAATTGTCATATGCGTCGTCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis