Browse Element(s) Details


Os.17188.1.S1_at

Description gb:BI812336
DB_XREF= gi:16578241
DB_XREF=E001G03
CLONE=E001G03
TID=Os.17188.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17188 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g367302/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36680OsAffx.14172.1.S1_at11/114+21942532..21947174Mlo family protein
LOC_Os04g36680OsAffx.14172.2.S1_x_at1/114+21942532..21947174Mlo family protein
LOC_Os04g36690OsAffx.26354.1.S1_at11/114+21949179..21949448hypothetical protein
LOC_Os04g36700Os.15234.1.S1_at11/114+21949279..21951848PCI domain containing protein, expressed
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17188.1.S1_at--915--8871NONE
TGAGGTATGCACACAAGAGAGTTCA
NONE
Os.17188.1.S1_at--1018--6731NONE
GTTCAGGAAGCATACTTTGACTTAT
NONE
Os.17188.1.S1_at--1069--10111NONE
TATGTTTATGTTTGACCTTCTGCGA
NONE
Os.17188.1.S1_at--896--6851NONE
GTTTGACCTTCTGCGATCTATGGAA
NONE
Os.17188.1.S1_at--215--6011NONE
GAGAGAGGTCTGGACTATTAGTCAA
NONE
Os.17188.1.S1_at--500--3911NONE
CTGGAGTATTAGGAGCTGCACAAGA
NONE
Os.17188.1.S1_at--1081--2791NONE
AAGATCCTGTTTCCTTGAATTCCCG
NONE
Os.17188.1.S1_at--869--4211NONE
CCGCCCCTGGGATTTGTGCAAAGTG
NONE
Os.17188.1.S1_at--491--751NONE
ATGTAGTGATCGTGTGCTCCTTGTC
NONE
Os.17188.1.S1_at--815--4311Chr04:21970933..21970957 (25 bp)
CCTTGTCAGCATCCACTTTTTAGTG
LOC_Os04g36730
Os.17188.1.S1_at--175--10351Chr04:21970949..21970973 (25 bp)
TTTTTAGTGCTTGTTGGTTCTATTT
LOC_Os04g36730
Target Sequence 
TGAGGTATGCACACAAGAGAGTTCAGGAAGCATACTTTGACTTATGCTTATGTTTATGTTTGACCTTCTGCGATCTATGG
AAAATGTAGTGGCTGGGTCGACAAGGTGTGATGTAAAGAGAGAGGTCTGGACTATTAGTCAAATAGCTGGAGTATTAGGA
GCTGCACAAGATCCTGTTTCCTTGAATTCCCGCCCCTGGGATTTGTGCAAAGTGCATGTAGTGATCGTGTGCTCCTTGTC
AGCATCCACTTTTTAGTGCTTGTTGGTTCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis