Browse Element(s) Details


OsAffx.14172.2.S1_x_at

Description tigr:9629.m02396
TID=OsAffx.14172.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2476011/11hypothetical protein
LOC_Os04g366801/11Mlo family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein
LOC_Os01g24780Os.34927.1.S1_at11/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24780Os.20572.1.A1_at1/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24790Os.34387.1.S1_at10/111+13939995..13941705Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0016021cellular_componentintegral to membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14172.2.S1_x_at--735--4011Chr01:13916048..13916072 (25 bp)
CGTCGTGTTCCAAGACCGAGGATAC
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--891--9411Chr01:13916046..13916070 (25 bp)
TCGTGTTCCAAGACCGAGGATACGC
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--1067--6671Chr01:13916042..13916066 (25 bp)
GTTCCAAGACCGAGGATACGCATCG
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--939--3211Chr01:13916038..13916062 (25 bp)
CAAGACCGAGGATACGCATCGCCGA
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--944--311Chr01:13916027..13916051 (25 bp)
ATACGCATCGCCGAGAGCCTCATGG
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--954--4072Chr04:21946673..21946697 (25 bp)
CGAGAGCCTCATGGGCCACTGGCTG
LOC_Os04g36680
OsAffx.14172.2.S1_x_at--506--5291Chr01:13915974..13915998 (25 bp)
GAAGGCGTCGTCGAACTCGCATCAC
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--796--891Chr01:13915972..13915996 (25 bp)
AGGCGTCGTCGAACTCGCATCACGG
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--775--9411Chr01:13915967..13915991 (25 bp)
TCGTCGAACTCGCATCACGGCGTCA
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--923--7191Chr01:13915925..13915949 (25 bp)
GTCGTCTCCGGCACTGGCGCGAGGA
LOC_Os01g24760
OsAffx.14172.2.S1_x_at--927--3951Chr01:13915878..13915902 (25 bp)
CGGATCTGGGCACCGTTCGACGTCC
LOC_Os01g24760
Target Sequence 
CGTCGTGTTCCAAGACCGAGGATACGCATCGCCGAGAGCCTCATGGGCCACTGGCTGCCTTGCCGGAGCGACGGGAAGGC
GTCGTCGAACTCGCATCACGGCGTCACCGCCCCGTCGGCTGCCGTCGTCTCCGGCACTGGCGCGAGGAGGCTGCTCGGAG
AAGGGACAGCCGGATCTGGGCACCGTTCGACGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14172.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis