Browse Element(s) Details


OsAffx.11193.2.S1_at

Description tigr:9629.m02392
TID=OsAffx.11193.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2473011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24680Os.5612.1.S1_at11/111+13869753..13875762Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11193.2.S1_at--636--3231Chr01:13897118..13897227 (25 bp)
CAAGCCAAGGGCATGCGGCCAAAGA
LOC_Os01g24730
OsAffx.11193.2.S1_at--353--7591Chr01:13897110..13897219 (25 bp)
GGGCATGCGGCCAAAGAGTAGTTCA
LOC_Os01g24730
OsAffx.11193.2.S1_at--46--4711Chr01:13897104..13897128 (25 bp)
GCGGCCAAAGAGTAGTTCATCTTCA
LOC_Os01g24730
OsAffx.11193.2.S1_at--987--1711Chr01:13897071..13897095 (25 bp)
ACCAGCACAAATCTCATCTTCGATG
LOC_Os01g24730
OsAffx.11193.2.S1_at--702--3051Chr01:13897062..13897086 (25 bp)
AATCTCATCTTCGATGGCATGGTGA
LOC_Os01g24730
OsAffx.11193.2.S1_at--772--6251Chr01:13897039..13897063 (25 bp)
GATGGTGACTCTGAATGGGCTGCTC
LOC_Os01g24730
OsAffx.11193.2.S1_at--431--7371Chr01:13897035..13897059 (25 bp)
GTGACTCTGAATGGGCTGCTCATGT
LOC_Os01g24730
OsAffx.11193.2.S1_at--418--2291Chr01:13896989..13897013 (25 bp)
AAAGGCCATGCCTTGTACTAGTGCC
LOC_Os01g24730
OsAffx.11193.2.S1_at--373--591Chr01:13896982..13897006 (25 bp)
ATGCCTTGTACTAGTGCCTGCCACT
LOC_Os01g24730
OsAffx.11193.2.S1_at--372--10811Chr01:13896977..13897001 (25 bp)
TTGTACTAGTGCCTGCCACTTCAGT
LOC_Os01g24730
OsAffx.11193.2.S1_at--935--1131Chr01:13896970..13896994 (25 bp)
AGTGCCTGCCACTTCAGTTCCACAA
LOC_Os01g24730
Target Sequence 
CAAGCCAAGGGCATGCGGCCAAAGAGTAGTTCATCTTCAACGAGTTCACCAGCACAAATCTCATCTTCGATGGCATGGTG
ATGGTGACTCTGAATGGGCTGCTCATGTTGACCAACAACACAAACAAGCAAAGGCCATGCCTTGTACTAGTGCCTGCCAC
TTCAGTTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11193.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis