Browse Element(s) Details


Os.4671.1.S1_a_at

Description gb:AF435970.1
DB_XREF= gi:16904239
TID=Os.4671.1
CNT=198
FEA=FLmRNA
TIER=FL+Stack
STK=52
UG=Os.4671 (NCBI UniGene Cluster)
DEF=Oryza sativa lectin-like protein mRNA, complete cds.
PROD=lectin-like protein
FL= gb:AF285163.1 gb:AF001395.1 gb:AF435970.1 gb:AK062520.1 gb:AK105034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2471011/11Salt stress-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24650NANA1+13860078..13860709hypothetical protein
LOC_Os01g24660OsAffx.25936.7.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.5.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.2.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24670OsAffx.23373.1.S1_at11/111+13868009..13868224hypothetical protein
LOC_Os01g24680Os.5612.1.S1_at11/111+13869753..13875762Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4671.1.S1_a_at--37--9671Chr01:13886026..13886050 (25 bp)
TCAGCATTCCACTGCAAGACTCTGG
LOC_Os01g24710
Os.4671.1.S1_a_at--672--1951Chr01:13886016..13886040 (25 bp)
ACTGCAAGACTCTGGCCATGTCGTT
LOC_Os01g24710
Os.4671.1.S1_a_at--795--8451Chr01:13886004..13886028 (25 bp)
TGGCCATGTCGTTGGATTCTTTGGA
LOC_Os01g24710
Os.4671.1.S1_a_at--286--6571Chr01:13885990..13886014 (25 bp)
GATTCTTTGGAAGGTCTGGAACGCT
LOC_Os01g24710
Os.4671.1.S1_a_at--353--7811Chr01:13885978..13886002 (25 bp)
GGTCTGGAACGCTTATCGACGCAAT
LOC_Os01g24710
Os.4671.1.S1_a_at--1103--8171Chr01:13885973..13885997 (25 bp)
GGAACGCTTATCGACGCAATTGGCA
LOC_Os01g24710
Os.4671.1.S1_a_at--180--3171Chr01:13885956..13885980 (25 bp)
AATTGGCATCTACGTCCACCCTTGA
LOC_Os01g24710
Os.4671.1.S1_a_at--757--9911Chr01:13885946..13885970 (25 bp)
TACGTCCACCCTTGATTCCCAGTGG
LOC_Os01g24710
Os.4671.1.S1_a_at--297--2731Chr01:13885918..13885942 (25 bp)
AAGAATTACTACCTACTACCATATC
LOC_Os01g24710
Os.4671.1.S1_a_at--676--3591Chr01:13885903..13885927 (25 bp)
CTACCATATCTACGAAATAATGTTC
LOC_Os01g24710
Os.4671.1.S1_a_at--968--7171Chr01:13885843..13885867 (25 bp)
GTCTGTGTACGTGTTGCACCGATCC
LOC_Os01g24710
Target Sequence 
TCAGCATTCCACTGCAAGACTCTGGCCATGTCGTTGGATTCTTTGGAAGGTCTGGAACGCTTATCGACGCAATTGGCATC
TACGTCCACCCTTGATTCCCAGTGGTCAAAGAATTACTACCTACTACCATATCTACGAAATAATGTTCCATGGGTGTTTG
TTGTACTTCATGCAATCCCCCCATTGTCTGTGTACGTGTTGCACCGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4671.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis