Browse Element(s) Details


OsAffx.11193.1.S1_x_at

Description gb:NM_184015.1
DB_XREF= gi:34895157
GEN=P0440D10.26
TID=OsAffx.11193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0440D10.26 (P0440D10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2473010/11hypothetical protein
LOC_Os08g045202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24680Os.5612.1.S1_at11/111+13869753..13875762Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11193.1.S1_x_at--456--1791Chr01:13897233..13897257 (25 bp)
ACGCGATGAAGTACAGCACACCGGA
NONE
OsAffx.11193.1.S1_x_at--273--5111Chr01:13897218..13897242 (25 bp)
GCACACCGGAGCGAGCAAGCCAAGG
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--666--2651Chr01:13896967..13897226 (25 bp)
AAGCCAAGGGCATGTTCCACAAGAT
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--186--732Chr08:2229635..2229654 (20 bp)
ATGTTCCACAAGATGCCCAATAGCA
LOC_Os08g04520
OsAffx.11193.1.S1_x_at--755--5271Chr01:13896927..13896951 (25 bp)
GAATGCAGTCCTTCTCCAAGGCCTT
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--67--891Chr01:13896909..13896933 (25 bp)
AGGCCTTCGTCATCATGTTCGAGGA
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--102--2291Chr01:13896885..13896909 (25 bp)
AAATGAGCAACCACGGCATGGCGTT
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--606--871Chr01:13896868..13896892 (25 bp)
ATGGCGTTCATCATCGGCGCTCGGC
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--816--9111Chr01:13896827..13896851 (25 bp)
TGCTGCTCGTGGTGGAGTCCGCAAC
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--1037--8931Chr01:13896780..13896804 (25 bp)
TGACGACGGCATCTTGGTGCAGCTC
LOC_Os01g24730
OsAffx.11193.1.S1_x_at--721--412Chr08:2229466..2229489 (24 bp)
ATCTTGGTGCAGCTCGTCGGAGTTC
LOC_Os08g04520
Target Sequence 
ACGCGATGAAGTACAGCACACCGGAGCGAGCAAGCCAAGGGCATGTTCCACAAGATGCCCAATAGCACGGGGAATGCAGT
CCTTCTCCAAGGCCTTCGTCATCATGTTCGAGGAAATGAGCAACCACGGCATGGCGTTCATCATCGGCGCTCGGCTCCAA
TGCCGCGCGGCTGCTGCTCGTGGTGGAGTCCGCAACCGCTGCTCCCCTCCAGCTCCCCTGACGACGGCATCTTGGTGCAG
CTCGTCGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11193.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis