Browse Element(s) Details


OsAffx.22833.1.S1_at

Description tigr:9629.m02397
TID=OsAffx.22833.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g247705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein
LOC_Os01g24780Os.34927.1.S1_at11/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24780Os.20572.1.A1_at1/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24790Os.34387.1.S1_at10/111+13939995..13941705Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22833.1.S1_at--746--10071Chr01:13919991..13920014 (24 bp)
TAGGCCGGCGGCAGCAGAGGGAGCC
NONE
OsAffx.22833.1.S1_at--44--6013Chr02:16124330..16124355 (25 bp)
GAGAGCGGCCGGTGAGCCTGGGAGG
NONE
OsAffx.22833.1.S1_at--861--7551Chr01:13919801..13919825 (25 bp)
GGGCCGAGTAGGTCGAGCTTCACTC
NONE
OsAffx.22833.1.S1_at--81--10071Chr01:13919793..13919817 (25 bp)
TAGGTCGAGCTTCACTCGTGAGTCG
NONE
OsAffx.22833.1.S1_at--21--5931Chr01:13919787..13919811 (25 bp)
GAGCTTCACTCGTGAGTCGTCGGCG
NONE
OsAffx.22833.1.S1_at--471--9691Chr01:13919782..13919806 (25 bp)
TCACTCGTGAGTCGTCGGCGGCAAT
NONE
OsAffx.22833.1.S1_at--451--3811Chr01:13919735..13919759 (25 bp)
CTCCTCGTCCTAGGCATGGCGCTGT
LOC_Os01g24770
OsAffx.22833.1.S1_at--94--4151Chr01:13919716..13919740 (25 bp)
CGCTGTGCGTACTCGCGTTGTTCCA
LOC_Os01g24770
OsAffx.22833.1.S1_at--24--7011Chr01:13919708..13919732 (25 bp)
GTACTCGCGTTGTTCCACTCAGCCG
LOC_Os01g24770
OsAffx.22833.1.S1_at--40--4451Chr01:13919659..13919683 (25 bp)
GCCATTGCGCGAGCTTCGTCTTCTG
LOC_Os01g24770
OsAffx.22833.1.S1_at--785--4071Chr01:13919650..13919674 (25 bp)
CGAGCTTCGTCTTCTGCGGGATAGG
LOC_Os01g24770
Target Sequence 
TAGGCCGGCGGCAGCAGAGGGAGCCTCGGAGAGAGGGGGCGGCGGCGGGCAGGGCTGCGGCGTGCGGAGCGGCCGCTGGC
GAGCGTGGCAGTGGGCGGCTGGAGAGGGGGAGGGGAGAGCGGCCGGTGAGCCTGGGAGGGAGGAGAGGGGGCAGCGACGG
GTGGAGGAGCCGCGAGAGAGGAGAGAGAGGGGGCCGAGTAGGTCGAGCTTCACTCGTGAGTCGTCGGCGGCAATGGCGTC
CCTCCGCGCGGTCCCCCTCCTCGTCCTAGGCATGGCGCTGTGCGTACTCGCGTTGTTCCACTCAGCCGCCTCCGCATCCT
GTTACCTCCGCCGCCATTGCGCGAGCTTCGTCTTCTGCGGGATAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis