Browse Element(s) Details


Os.34927.1.S1_at

Description gb:AK069610.1
DB_XREF= gi:32979634
TID=Os.34927.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (B1051E10.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019H16, full insert sequence.
FL= gb:AK069610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2478011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein
LOC_Os01g24780Os.34927.1.S1_at11/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24780Os.20572.1.A1_at1/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24790Os.34387.1.S1_at10/111+13939995..13941705Transferase family protein, expressed
LOC_Os01g24800Os.46012.2.S1_x_at8/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.46012.3.S1_x_at6/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.27088.1.A1_x_at4/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800OsAffx.10222.1.S1_x_at1/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34927.1.S1_at--944--7511Chr01:13925978..13926002 (25 bp)
GTGGAGATGCAATTCCAACGCCCGA
LOC_Os01g24780
Os.34927.1.S1_at--978--2491Chr01:13926543..13926567 (25 bp)
AACATGGTTCTCTTGGAATCACTGA
LOC_Os01g24780
Os.34927.1.S1_at--159--8351Chr01:13926568..13926592 (25 bp)
GGCTGTACAGCCCAGTAGTAATCAT
LOC_Os01g24780
Os.34927.1.S1_at--891--10271Chr01:13926655..13926679 (25 bp)
TTTCCATACCGATCGCCAAGATACA
LOC_Os01g24780
Os.34927.1.S1_at--829--8671Chr01:13926778..13926802 (25 bp)
TGTCCTTCTCACAGGGTCCAAGAGG
LOC_Os01g24780
Os.34927.1.S1_at--133--7791Chr01:13926792..13926816 (25 bp)
GGTCCAAGAGGTTGCATCGGCCAGA
LOC_Os01g24780
Os.34927.1.S1_at--838--1011Chr01:13926864..13926888 (25 bp)
AGGTTCGAGTTTAGGCTGTCTCCAT
LOC_Os01g24780
Os.34927.1.S1_at--723--831Chr01:13926906..13926930 (25 bp)
ATGGAGGCGATCACCTTGAGGCCCA
LOC_Os01g24780
Os.34927.1.S1_at--854--10851Chr01:13926934..13926958 (25 bp)
TTGGACTTCCTGTTGTCCTAAGGAA
LOC_Os01g24780
Os.34927.1.S1_at--703--9871Chr01:13927000..13927024 (25 bp)
TACAGTGTGTCGATCTCTACGGTTC
LOC_Os01g24780
Os.34927.1.S1_at--357--9511Chr01:13927015..13927039 (25 bp)
TCTACGGTTCGTGCCTTCATTATAT
LOC_Os01g24780
Target Sequence 
GTGGAGATGCAATTCCAACGCCCGACATGGCTAACAGGCTGAAACTGGTTAACATGGTTCTCTTGGAATCACTGAGGCTG
TACAGCCCAGTAGTAATCATAAGGAGGATTGCTGGTTCAGATATCGATCTTGGCAACCTAAAAATTCCCAAGGGAACTGT
GCTTTCCATACCGATCGCCAAGATACACCGGGACAGGGATGTATGGGGACCCGATGCCGACGAGTTCAACCCTGCAAGGT
TCAAGAATGGCGTGTCGAGAGCCGCGAGCTACCCAAACGCGCTGCTGTCCTTCTCACAGGGTCCAAGAGGTTGCATCGGC
CAGACCTTCGCGATGCTAGAGTCGCAGATCGCGATCGCCATGATCCTCCAGAGGTTCGAGTTTAGGCTGTCTCCATCGTA
CGTTCATGCTCCCATGGAGGCGATCACCTTGAGGCCCAGGTTTGGACTTCCTGTTGTCCTAAGGAATCTCCAGGGATGAG
ATGGACCGTACGTACTATTATATATTATACAGTGTGTCGATCTCTACGGTTCGTGCCTTCATTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis