Browse Element(s) Details


Os.34387.1.S1_at

Description gb:AK071594.1
DB_XREF= gi:32981617
TID=Os.34387.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1051E10.23 (B1051E10.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102H06, full insert sequence.
FL= gb:AK071594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2479010/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24760OsAffx.14172.2.S1_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24760OsAffx.14172.2.S1_x_at11/111+13915731..13916819hypothetical protein
LOC_Os01g24770OsAffx.22833.1.S1_at5/111+13919006..13919783hypothetical protein
LOC_Os01g24780Os.34927.1.S1_at11/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24780Os.20572.1.A1_at1/111+13923812..13927086Cytochrome P450 family protein, expressed
LOC_Os01g24790Os.34387.1.S1_at10/111+13939995..13941705Transferase family protein, expressed
LOC_Os01g24800Os.46012.2.S1_x_at8/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.46012.3.S1_x_at6/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.27088.1.A1_x_at4/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800OsAffx.10222.1.S1_x_at1/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24810OsAffx.23374.1.S1_at11/111+13960445..13962019Cytochrome P450 family protein
LOC_Os01g24820OsAffx.23375.1.S1_at11/111+13962366..13966225NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34387.1.S1_at--990--571Chr01:13941118..13941142 (25 bp)
ATCCACGGCCGAATGTCTGGTTCTG
LOC_Os01g24790
Os.34387.1.S1_at--25--10651Chr01:13941264..13941288 (25 bp)
TTCCCACGGTGAGCTTGCTGGTCAA
LOC_Os01g24790
Os.34387.1.S1_at--1032--3171Chr01:13941304..13941328 (25 bp)
CAATGTCGTGGGTGCCGTTGTTTCA
LOC_Os01g24790
Os.34387.1.S1_at--920--8771Chr01:13941322..13941346 (25 bp)
TGTTTCATTGCCATCGCTCGTCATG
LOC_Os01g24790
Os.34387.1.S1_at--227--1551Chr01:13941371..13941395 (25 bp)
AGCTTTCTCAACACTTAGGTCATAT
LOC_Os01g24790
Os.34387.1.S1_at--45--231Chr01:13941392..13941416 (25 bp)
ATATATACTCAATGACCCCACTAGC
LOC_Os01g24790
Os.34387.1.S1_at--307--1771Chr01:13941429..13941453 (25 bp)
ACCTGCATGCTACCACACAATAATT
LOC_Os01g24790
Os.34387.1.S1_at--676--351Chr01:13941448..13941472 (25 bp)
ATAATTCATCTGTACGTTAGGGACG
LOC_Os01g24790
Os.34387.1.S1_at--962--6775Chr07:15591732..15591942 (25 bp)
GTTATGAGATCTGTTCCGCTAAATA
NONE
Os.34387.1.S1_at--628--7791NONE
GGTCAGGACCTAGCAACTTAACATG
NONE
Os.34387.1.S1_at--367--1051Chr01:13941681..13941705 (25 bp)
AGGTGATTCCATTTCATCGTCGTTC
LOC_Os01g24790
Target Sequence 
ATCCACGGCCGAATGTCTGGTTCTGCGGCGGCGCCCGCGTTTAGCCAGGACCAACCTCTTCGTCGTTACCGACGTCCGAC
GCGTGGGGTTCGACCGCGTGGATTTTGGGTGGGGCGACCCGGTGTACGGCGGCCCAGCTCGGGCGCTTCCCACGGTGAGC
TTGCTGGTCAACGTCAAGGGCAGCAGCAATGTCGTGGGTGCCGTTGTTTCATTGCCATCGCTCGTCATGGGGAGGTTCTC
GGCTGAGCTGGAGAGCTTTCTCAACACTTAGGTCATATATACTCAATGACCCCACTAGCTACGTACTGCACACCTGCATG
CTACCACACAATAATTCATCTGTACGTTAGGGACGTACGGGTGGTAACCCAAAAATACTTTTAACTTTTACTACTAGACT
ATTCTATGCACGGGAAAAGCTTAATGATCGAAGGAAAAGCTCTTCAATTGCTAATGTTATGAGATCTGTTCCGCTAAATA
TTTTTTAAGTAGGGTTTTAGTTGGTCAGGACCTAGCAACTTAACATGAATTATGTGTTTCTATTGTACATATTCAGTTAC
CAAAGGTGATTCCATTTCATCGTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis