Browse Element(s) Details


OsAffx.23375.1.S1_at

Description tigr:9629.m02402
TID=OsAffx.23375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mla1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2482011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24790Os.34387.1.S1_at10/111+13939995..13941705Transferase family protein, expressed
LOC_Os01g24800Os.46012.2.S1_x_at8/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.46012.3.S1_x_at6/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.27088.1.A1_x_at4/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800OsAffx.10222.1.S1_x_at1/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24810OsAffx.23374.1.S1_at11/111+13960445..13962019Cytochrome P450 family protein
LOC_Os01g24820OsAffx.23375.1.S1_at11/111+13962366..13966225NB-ARC domain containing protein
LOC_Os01g24830OsAffx.10621.1.S1_x_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24830OsAffx.10621.1.S1_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24840OsAffx.23376.2.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24840OsAffx.23376.1.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24849NANA1+13978325..13979411NA
LOC_Os01g24860NANA1+13981312..13986602retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24870NANA1+13987521..13989505hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23375.1.S1_at--71--9291Chr01:13962883..13962907 (25 bp)
TCCGATCATTCAGCGCGTTGGCGAC
LOC_Os01g24820
OsAffx.23375.1.S1_at--820--6611Chr01:13962867..13962891 (25 bp)
GTTGGCGACGTACATCTCCTGTAGC
LOC_Os01g24820
OsAffx.23375.1.S1_at--482--8631Chr01:13962738..13962762 (25 bp)
TGGGAAGCTGCCTGTTCTTCGGACA
LOC_Os01g24820
OsAffx.23375.1.S1_at--442--8131Chr01:13962718..13962742 (25 bp)
GGACACTTCGCGTGGAGCCATACGA
LOC_Os01g24820
OsAffx.23375.1.S1_at--962--1351Chr01:13962666..13962690 (25 bp)
AGACGCGTTCCCGTGTCTGAAGGAA
LOC_Os01g24820
OsAffx.23375.1.S1_at--711--912Chr03:16374741..16374763 (22 bp)
AGGCTTCGGATCATCGAGTTCTGCT
NONE
OsAffx.23375.1.S1_at--988--5851Chr01:13962549..13962573 (25 bp)
GACCAAGGATCTCGGCAATGGCTTC
LOC_Os01g24820
OsAffx.23375.1.S1_at--351--3271Chr01:13962511..13962535 (25 bp)
CAAACCTTGGTTGCCTCGAGGAAGC
LOC_Os01g24820
OsAffx.23375.1.S1_at--140--5431Chr01:13962491..13962515 (25 bp)
GAAGCCACCGTTTACATCAACTGTA
LOC_Os01g24820
OsAffx.23375.1.S1_at--953--2911Chr01:13962467..13962491 (25 bp)
AAGGAGGCCACCGAACCTGAGGCAG
LOC_Os01g24820
OsAffx.23375.1.S1_at--891--5531Chr01:13962423..13962447 (25 bp)
GAAACATGCAGCTGACACACATCCT
LOC_Os01g24820
Target Sequence 
TCCGATCATTCAGCGCGTTGGCGACGTACATCTCCTGTAGCCCACTGCGGCTGCTGCCAGCGTGGATCGCCGCCTCCGTC
GTGCCGCGCCTCGCCGTGCTGCTCATCCAGGTGAGGGAGCTCAGGCAGGTGGACATCGACGCCCTTGGGAAGCTGCCTGT
TCTTCGGACACTTCGCGTGGAGCCATACGAGATGAAGGAGATGATTGTGATTGGTCGAGACGCGTTCCCGTGTCTGAAGG
AATGCCGGTTCCGGAACTCGGACCACGGGCCGGTGATCCAGCGGGGAGCCATGCCGAGGCTTCGGATCATCGAGTTCTGC
TTCGGGGTAAGGCAGACCAAGGATCTCGGCAATGGCTTCGACTTTGGATTGGCAAACCTTGGTTGCCTCGAGGAAGCCAC
CGTTTACATCAACTGTAAGGAGGCCACCGAACCTGAGGCAGAGGAAGCAGAGGGGGCAGTGAAACATGCAGCTGACACAC
ATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis