Browse Element(s) Details


OsAffx.23374.1.S1_at

Description tigr:9629.m02401
TID=OsAffx.23374.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2481011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24790Os.34387.1.S1_at10/111+13939995..13941705Transferase family protein, expressed
LOC_Os01g24800Os.46012.2.S1_x_at8/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.46012.3.S1_x_at6/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.27088.1.A1_x_at4/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800OsAffx.10222.1.S1_x_at1/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24810OsAffx.23374.1.S1_at11/111+13960445..13962019Cytochrome P450 family protein
LOC_Os01g24820OsAffx.23375.1.S1_at11/111+13962366..13966225NB-ARC domain containing protein
LOC_Os01g24830OsAffx.10621.1.S1_x_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24830OsAffx.10621.1.S1_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24840OsAffx.23376.2.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24840OsAffx.23376.1.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24849NANA1+13978325..13979411NA
LOC_Os01g24860NANA1+13981312..13986602retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23374.1.S1_at--51--5031Chr01:13961428..13961452 (25 bp)
GCAGTGGATCATGGCTCGTGTCGTC
LOC_Os01g24810
OsAffx.23374.1.S1_at--716--1271Chr01:13961487..13961511 (25 bp)
AGATCAACCGCGTGGTGTCGAGCGA
LOC_Os01g24810
OsAffx.23374.1.S1_at--450--6971Chr01:13961551..13961575 (25 bp)
GTACCTCAAGGCACTAGTCCTAGAG
LOC_Os01g24810
OsAffx.23374.1.S1_at--636--3471Chr01:13961665..13961689 (25 bp)
CAGGTCGGTGAATTTCTCGGTGGCC
LOC_Os01g24810
OsAffx.23374.1.S1_at--1064--8971Chr01:13961673..13961697 (25 bp)
TGAATTTCTCGGTGGCCGACGTGGC
LOC_Os01g24810
OsAffx.23374.1.S1_at--294--4231Chr01:13961688..13961712 (25 bp)
CCGACGTGGCGCACGACGAGAACGT
LOC_Os01g24810
OsAffx.23374.1.S1_at--717--1971Chr01:13961774..13961798 (25 bp)
ACTGACCTGACTGGAAGCCGGGAGA
LOC_Os01g24810
OsAffx.23374.1.S1_at--404--6171Chr01:13961827..13961851 (25 bp)
GAGGATCTGCCCTGGACTTGGCCTC
LOC_Os01g24810
OsAffx.23374.1.S1_at--755--371Chr01:13961936..13961960 (25 bp)
ATCAACCTTGCCGAGAGGCCGGAGT
LOC_Os01g24810
OsAffx.23374.1.S1_at--991--1311Chr01:13961949..13961973 (25 bp)
AGAGGCCGGAGTTCACCGTGATAAT
LOC_Os01g24810
OsAffx.23374.1.S1_at--124--1791Chr01:13961963..13961987 (25 bp)
ACCGTGATAATGGAGCAGCCGCTTC
LOC_Os01g24810
Target Sequence 
GCAGTGGATCATGGCTCGTGTCGTCGAGCAGCCGGAGATTCAGGCGAAGCTGCTGGACGAGATCAACCGCGTGGTGTCGA
GCGACAAGGAGCACGTCGACGAGGAAGACATCAAGTCCATGGCGTACCTCAAGGCACTAGTCCTAGAGGGGCTACGTCGA
CACCCGCCGGCACACTTCCTGCTGTCGCACGCCGCGGTGGAGGAGACGTCGCTGGACGGGCACCGCATCCCGGCGGGCAG
GTCGGTGAATTTCTCGGTGGCCGACGTGGCGCACGACGAGAACGTGTGGAGCCGGCCGGAGGAGTTCCTGCCGGAGAGGT
TCCTGGACGGAGGGGAAGGTGCCGGGACTGACCTGACTGGAAGCCGGGAGATCAAGATGATGCCGTTCGGAGTTGGGAGG
AGGATCTGCCCTGGACTTGGCCTCGCGCTGCTGCAGCTGGAGTACTTCGTGGCGAACATGGTCCGGGAGTTCGAATGGGG
GATGGTGGATGGTGATTGTGGTGGTGGCATCAACCTTGCCGAGAGGCCGGAGTTCACCGTGATAATGGAGCAGCCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis