Browse Element(s) Details


OsAffx.23376.2.S1_at

Description tigr:9629.m02404
TID=OsAffx.23376.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2484011/11mariner transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24800Os.46012.2.S1_x_at8/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.46012.3.S1_x_at6/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800Os.27088.1.A1_x_at4/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24800OsAffx.10222.1.S1_x_at1/111+13947150..13952611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24810OsAffx.23374.1.S1_at11/111+13960445..13962019Cytochrome P450 family protein
LOC_Os01g24820OsAffx.23375.1.S1_at11/111+13962366..13966225NB-ARC domain containing protein
LOC_Os01g24830OsAffx.10621.1.S1_x_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24830OsAffx.10621.1.S1_at11/111+13967568..13968161hypothetical protein
LOC_Os01g24840OsAffx.23376.2.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24840OsAffx.23376.1.S1_at11/111+13969219..13971192mariner transposase, putative
LOC_Os01g24849NANA1+13978325..13979411NA
LOC_Os01g24860NANA1+13981312..13986602retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24870NANA1+13987521..13989505hypothetical protein
LOC_Os01g24880Os.5342.2.S1_x_at10/111+13994996..14001917VIP2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23376.2.S1_at--257--6171Chr01:13969549..13969573 (25 bp)
GAGGAGGTACTACTCGGACGAACTA
LOC_Os01g24840
OsAffx.23376.2.S1_at--1078--2791Chr01:13969524..13969548 (25 bp)
AAGATCGCCATATACCTGGTGTTGT
LOC_Os01g24840
OsAffx.23376.2.S1_at--965--8811Chr01:13969502..13969526 (25 bp)
TGTTGGCGAAGGCAGATCCACCTGT
LOC_Os01g24840
OsAffx.23376.2.S1_at--1117--3791Chr01:13969476..13969500 (25 bp)
CTCCACCGTGGCGTTTCGAAGCAAG
LOC_Os01g24840
OsAffx.23376.2.S1_at--231--6851Chr01:13969464..13969488 (25 bp)
GTTTCGAAGCAAGTCGCGCTGAAAT
LOC_Os01g24840
OsAffx.23376.2.S1_at--234--8971Chr01:13969445..13969469 (25 bp)
TGAAATTCGGCGTGCCTCTTAGACT
LOC_Os01g24840
OsAffx.23376.2.S1_at--1104--4451Chr01:13969432..13969456 (25 bp)
GCCTCTTAGACTTGTGCAGCATGTA
LOC_Os01g24840
OsAffx.23376.2.S1_at--200--5751Chr01:13969377..13969401 (25 bp)
GACGGCGTTGTGAACAAGCTTTTCA
LOC_Os01g24840
OsAffx.23376.2.S1_at--1056--2651Chr01:13969316..13969340 (25 bp)
AAGCCATCAGAGATGTGCCTTCGGG
LOC_Os01g24840
OsAffx.23376.2.S1_at--190--7171Chr01:13969271..13969295 (25 bp)
GTCTCGCTGACGCACTAGGTGTGAA
LOC_Os01g24840
OsAffx.23376.2.S1_at--991--5371Chr01:13969249..13969273 (25 bp)
GAAGAAGACCACACTTCATAATCGC
LOC_Os01g24840
Target Sequence 
GAGGAGGTACTACTCGGACGAACTAAAGATCGCCATATACCTGGTGTTGTTGGCGAAGGCAGATCCACCTGTGCTCCACC
GTGGCGTTTCGAAGCAAGTCGCGCTGAAATTCGGCGTGCCTCTTAGACTTGTGCAGCATGTATGGCAAAATGGTAAGGAA
AAGGGATGTGTAGACGGCGTTGTGAACAAGCTTTTCAAAAACGTTGGCCGCAAAAGGATAGAGATAGACTTGGAAGCCAT
CAGAGATGTGCCTTCGGGGGAGCGTGCAACCCTCCGGCGTCTCGCTGACGCACTAGGTGTGAAGAAGACCACACTTCATA
ATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23376.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis