Browse Element(s) Details


Os.6832.1.S1_at

Description gb:AK062553.1
DB_XREF= gi:32972571
TID=Os.6832.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0440D10.21 (P0440D10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H05, full insert sequence.
FL= gb:AK062553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2470011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24630NANA1+13850973..13857128transposon protein, putative, unclassified
LOC_Os01g24640Os.10827.1.S1_x_at6/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24640Os.46055.2.S1_x_at4/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24650NANA1+13860078..13860709hypothetical protein
LOC_Os01g24660OsAffx.25936.7.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.5.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.2.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24670OsAffx.23373.1.S1_at11/111+13868009..13868224hypothetical protein
LOC_Os01g24680Os.5612.1.S1_at11/111+13869753..13875762Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6832.1.S1_at--1066--2571Chr01:13882519..13882540 (22 bp)
AACGATCAAGTTTGGCCCTTCCGAG
LOC_Os01g24700
Os.6832.1.S1_at--1030--1191Chr01:13882483..13882507 (25 bp)
AGTTTCTGGAACTCATGGCACGCTC
LOC_Os01g24700
Os.6832.1.S1_at--546--3711Chr01:13882452..13882476 (25 bp)
CTAGCGGATATTCTGACGTACCTGA
LOC_Os01g24700
Os.6832.1.S1_at--448--6591Chr01:13882426..13882450 (25 bp)
GATTGTCACGGATGTTACCACGCAC
LOC_Os01g24700
Os.6832.1.S1_at--567--3351Chr01:13882408..13882432 (25 bp)
CACGCACGAGTTTGGTGTCCCGAAT
LOC_Os01g24700
Os.6832.1.S1_at--583--8691Chr01:13882393..13882417 (25 bp)
TGTCCCGAATGGAACGGCCTTCAGT
LOC_Os01g24700
Os.6832.1.S1_at--606--8531Chr01:13882321..13882345 (25 bp)
TGGACTGCTCGTCGATGCTATTGGC
LOC_Os01g24700
Os.6832.1.S1_at--809--6131Chr01:13882098..13882122 (25 bp)
GAGGGATCCTGCTGAGTCTGCGTTC
LOC_Os01g24700
Os.6832.1.S1_at--639--9491Chr01:13882082..13882106 (25 bp)
TCTGCGTTCTACCTGATAACCTCAA
LOC_Os01g24700
Os.6832.1.S1_at--960--6451Chr01:13882068..13882092 (25 bp)
GATAACCTCAAACCTTGCCTTGTTA
LOC_Os01g24700
Os.6832.1.S1_at--427--9851Chr01:13882038..13882062 (25 bp)
TACAAAGTGTGTGCCGTCATTGAAT
LOC_Os01g24700
Target Sequence 
AACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTC
TGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCCGAATGGAACGGCCTTCAGTGTCCCGCTC
CAGGACGACGCTCGTGCCGTCGGCTTCTTTGCGCGCTCTGGACTGCTCGTCGATGCTATTGGCGTNTATGTCCAACCATN
GATGCGATGCCCTGCAGCTACGTACCTGTGCCATTGCCCGTTACTGCATGCTCTACAATGGNTTTGTNGAGAATCAGAGT
GGATTATATATNGTANNTTTGCACAACCGAATATTTCAATAANTTCCACTCTGATTCTGTGTCGNTAAGTCATATATATG
TATTGTAAATCGTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGCGTTCTACCTGATAACCTCAAACCTTGCCTT
GTTATTATTTACAAAGTGTGTGCCGTCATTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis