Browse Element(s) Details


Os.11335.4.S1_at

Description gb:AK120842.1
DB_XREF= gi:37990465
TID=Os.11335.4
CNT=44
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine acetyltransferase (P0690B02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022J07, full insert sequence.
FL= gb:AK120842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2469011/1160S ribosomal protein L23A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24630NANA1+13850973..13857128transposon protein, putative, unclassified
LOC_Os01g24640Os.10827.1.S1_x_at6/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24640Os.46055.2.S1_x_at4/111+13858327..13859784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24650NANA1+13860078..13860709hypothetical protein
LOC_Os01g24660OsAffx.25936.7.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_s_at10/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.1.S1_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.5.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24660OsAffx.25936.2.S1_x_at1/111+13862725..13865760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24670OsAffx.23373.1.S1_at11/111+13868009..13868224hypothetical protein
LOC_Os01g24680Os.5612.1.S1_at11/111+13869753..13875762Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os01g24690Os.11335.4.S1_at11/111+13878772..1388073460S ribosomal protein L23A, putative, expressed
LOC_Os01g24700Os.6832.1.S1_at11/111+13882004..13883210expressed protein
LOC_Os01g24710Os.4671.1.S1_a_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24710Os.57456.1.S1_x_at11/111+13885637..13887196Salt stress-induced protein, putative, expressed
LOC_Os01g24720NANA1+13894310..13894672hypothetical protein
LOC_Os01g24730OsAffx.11193.2.S1_at11/111+13896740..13897252hypothetical protein
LOC_Os01g24730OsAffx.11193.1.S1_x_at10/111+13896740..13897252hypothetical protein
LOC_Os01g24740NANA1+13898348..13898668peroxiredoxin type 2, putative
LOC_Os01g24750Os.5558.1.S1_at11/111+13904950..13909934Serine/threonine protein phosphatase PP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005622cellular_componentintracellular
GO:0009282cellular_componentcytosolic large ribosomal subunit (sensu Bacteria)
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11335.4.S1_at--200--3991Chr01:13880397..13880421 (25 bp)
CGTGAAGCTCACTCCAGACTATGAT
LOC_Os01g24690
Os.11335.4.S1_at--466--3751Chr01:13880404..13880428 (25 bp)
CTCACTCCAGACTATGATGCTCTTG
LOC_Os01g24690
Os.11335.4.S1_at--741--711Chr01:13880417..13880441 (25 bp)
ATGATGCTCTTGATGTGGCCAACAA
LOC_Os01g24690
Os.11335.4.S1_at--423--4971Chr01:13880447..13880471 (25 bp)
GCATCATTTAAGTTAGGGCGCTTTT
LOC_Os01g24690
Os.11335.4.S1_at--454--5451Chr01:13880484..13880508 (25 bp)
GAACGTAAGATTTTGGTTGGCTAGT
LOC_Os01g24690
Os.11335.4.S1_at--445--10831Chr01:13880496..13880520 (25 bp)
TTGGTTGGCTAGTTCTTAATGTTGA
LOC_Os01g24690
Os.11335.4.S1_at--908--5491Chr01:13880519..13880543 (25 bp)
GAACAGAACCTTATAACTTGCAAAA
LOC_Os01g24690
Os.11335.4.S1_at--952--3551Chr01:13880547..13880571 (25 bp)
CATCTTGAGTTTTGTTGAGCGAATA
LOC_Os01g24690
Os.11335.4.S1_at--506--5231Chr01:13880567..13880591 (25 bp)
GAATATCATCTGTGTGAGCGCACAT
LOC_Os01g24690
Os.11335.4.S1_at--1142--7371Chr01:13880580..13880604 (25 bp)
GTGAGCGCACATTTACTGAATCAGT
LOC_Os01g24690
Os.11335.4.S1_at--509--8811Chr01:13880654..13880678 (25 bp)
TGTTGGTCGAACTGTATGGAGCTAA
LOC_Os01g24690
Target Sequence 
CGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTTTTCA
TCATGTTGAACGTAAGATTTTGGTTGGCTAGTTCTTAATGTTGAACAGAACCTTATAACTTGCAAAAGAACATCTTGAGT
TTTGTTGAGCGAATATCATCTGTGTGAGCGCACATTTACTGAATCAGTATATCAATNGTCAGTTGTGCATCTTCTTCCAA
CANNANNNNANNNNNNNNTGTTGGTCGAACTGTATGGAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11335.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis