Browse Element(s) Details


Os.7537.1.S1_at

Description gb:AK063700.1
DB_XREF= gi:32973718
TID=Os.7537.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G08, full insert sequence.
FL= gb:AK063700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3675011/1122.0 kDa class IV heat shock protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36710OsAffx.26355.1.S1_at11/114+21957157..21958566hypothetical protein
LOC_Os04g36720Os.14145.1.A1_at11/114+21963524..21967868ferric reductase-like transmembrane component family protein, putative, expressed
LOC_Os04g36730Os.9944.1.S1_at11/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36730Os.17188.1.S1_at2/114+21969939..21972755PHD finger protein, putative, expressed
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7537.1.S1_at--479--971Chr04:21982436..21982460 (25 bp)
AGGAGCGGTCCTACGGCAGGTTCTG
LOC_Os04g36750
Os.7537.1.S1_at--117--7911Chr04:21982538..21982562 (25 bp)
GGTTCCGGAAGCTGGCGCCCGACCA
LOC_Os04g36750
Os.7537.1.S1_at--689--5891Chr04:21982679..21982703 (25 bp)
GAGCTGTGAAATTTGTCGAGTGGAA
LOC_Os04g36750
Os.7537.1.S1_at--23--9391Chr04:21982694..21982718 (25 bp)
TCGAGTGGAAACTATGGTTGCGAGT
LOC_Os04g36750
Os.7537.1.S1_at--216--10711Chr04:21982711..21982735 (25 bp)
TTGCGAGTGGTGTGTTGTCACTTGT
LOC_Os04g36750
Os.7537.1.S1_at--1008--6631Chr04:21982724..21982748 (25 bp)
GTTGTCACTTGTTTGCAGAGCACAT
LOC_Os04g36750
Os.7537.1.S1_at--1150--3611Chr04:21982731..21982755 (25 bp)
CTTGTTTGCAGAGCACATGTTCCGG
LOC_Os04g36750
Os.7537.1.S1_at--343--8771Chr04:21982748..21982772 (25 bp)
TGTTCCGGTACATAAAATGCGTGTG
LOC_Os04g36750
Os.7537.1.S1_at--790--2291Chr04:21982779..21982803 (25 bp)
AAATGTGAAGATGTATCGCACTTTC
LOC_Os04g36750
Os.7537.1.S1_at--363--6911Chr04:21982791..21982815 (25 bp)
GTATCGCACTTTCATCGTTGTGCAG
LOC_Os04g36750
Os.7537.1.S1_at--547--511Chr04:21982804..21982828 (25 bp)
ATCGTTGTGCAGATCTTAACTGAGG
LOC_Os04g36750
Target Sequence 
AGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGNTCCGCCTCCCCNGACAACGCCGACCTNGACTCCATCGCCGCCTCCCT
CGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCT
CCGCCGGCGGTGACGACGGTGGCAANAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAG
CTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCG
GTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis