Browse Element(s) Details


Os.9328.1.S1_at

Description gb:AK107204.1
DB_XREF= gi:32992413
TID=Os.9328.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B07, full insert sequence.
FL= gb:AK107204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4073011/11Ammonium transporter 1, member 2, putative, expressed
LOC_Os04g282701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9328.1.S1_at--483--7572Chr02:24686311..24686335 (25 bp)
GGGCGCACATAGTGGTCATCCTGGT
LOC_Os02g40730
Os.9328.1.S1_at--337--9611Chr02:24686326..24686350 (25 bp)
TCATCCTGGTCATCGCGGCGTGGGT
LOC_Os02g40730
Os.9328.1.S1_at--1162--9331Chr02:24686458..24686482 (25 bp)
TCGCGTACGCGTACCACGACGACGA
LOC_Os02g40730
Os.9328.1.S1_at--914--4212Chr02:24686551..24686575 (25 bp)
CCGCCGAGATGGGAGGCCATGTCTA
LOC_Os02g40730
Os.9328.1.S1_at--486--3511Chr02:24686568..24686592 (25 bp)
CATGTCTAGTGGAACCGGAGGAGCT
LOC_Os02g40730
Os.9328.1.S1_at--256--2111Chr02:24686608..24686632 (25 bp)
ACATGCAGCATCATCGATCGAACGA
LOC_Os02g40730
Os.9328.1.S1_at--146--9071Chr02:24686635..24686659 (25 bp)
TGCATATAAGCGTTTTTCAAGGTTG
LOC_Os02g40730
Os.9328.1.S1_at--777--10371Chr02:24686648..24686672 (25 bp)
TTTTCAAGGTTGATCTGATGCTGCA
LOC_Os02g40730
Os.9328.1.S1_at--477--10151Chr02:24686718..24686742 (25 bp)
TATCTGAGATCATCTGTTTGGAACA
LOC_Os02g40730
Os.9328.1.S1_at--664--2412Chr02:24686788..24686812 (25 bp)
AAAAATCCCTTTATCTCAACTCTCA
LOC_Os02g40730
Os.9328.1.S1_at--817--1171Chr02:24686813..24686837 (25 bp)
AGTAGAGCTTTGCTTTGTACAACAA
LOC_Os02g40730
Target Sequence 
GGGCGCACATAGTGGTCATCCTGGTCATCGCGGCGTGGGTGAGCTTCACCATGGCGCCGCTGTTCCTGGTGCTCAACAAG
CTGGGCTTGCTGCGCATCTCGGCCGAGGACGAGATGGCCGGCATGGACCAGACGCGCCACGGCGGGTTCGCGTACGCGTA
CCACGACGACGACGCGAGCGGCAAGCCGGACCGCAGCGTCGGCGGGTTCATGCTCAAGTCGGCGCACGGCACGCAGGTCG
CCGCCGAGATGGGAGGCCATGTCTAGTGGAACCGGAGGAGCTGAGCTAGTAGTACATACATGCAGCATCATCGATCGAAC
GAAATGCATATAAGCGTTTTTCAAGGTTGATCTGATGCTGCANGTTTCGTGATTGTATAATANGAAGAAAAAGATAGTNG
TATTTTTTATCTGAGATCATCTGTTTGGAACAGGGGATTTGACTAAGATTTGATATAAATTTACACAAAATCTTAGCAAA
AATCCCTTTATCTCAACTCTCAAGTAGAGCTTTGCTTTGTACAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis