Browse Element(s) Details


OsAffx.12436.1.S1_at

Description tigr:9630.m03939
TID=OsAffx.12436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4076011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12436.1.S1_at--16--7351Chr02:24695650..24695674 (25 bp)
GTGAACCCGGTGCAGTTCCTCGCCG
LOC_Os02g40760
OsAffx.12436.1.S1_at--897--7131Chr02:24695623..24695647 (25 bp)
GTCTTCCGCTACCTGGGCGAGGACA
LOC_Os02g40760
OsAffx.12436.1.S1_at--5--7531Chr02:24695455..24695479 (25 bp)
GTGGAGCACTTGTACATGATCTGCT
LOC_Os02g40760
OsAffx.12436.1.S1_at--596--8751Chr02:24695445..24695469 (25 bp)
TGTACATGATCTGCTCCTGCTTCTG
LOC_Os02g40760
OsAffx.12436.1.S1_at--145--1931Chr02:24695337..24695361 (25 bp)
ACGGTGTCGACCTGGCTTTTACGCA
LOC_Os02g40760
OsAffx.12436.1.S1_at--484--3671Chr02:24695322..24695346 (25 bp)
CTTTTACGCAGGACGAGTTGACCGC
LOC_Os02g40760
OsAffx.12436.1.S1_at--197--4711Chr02:24695227..24695251 (25 bp)
GCGGCCGTAGACGAGATCGTCCTGA
LOC_Os02g40760
OsAffx.12436.1.S1_at--947--6391Chr02:24695213..24695237 (25 bp)
GATCGTCCTGAATGCACTGGGATTC
LOC_Os02g40760
OsAffx.12436.1.S1_at--150--6571Chr02:24695193..24695217 (25 bp)
GATTCAATGAGTTTGCTCGCGACCT
LOC_Os02g40760
OsAffx.12436.1.S1_at--1078--10691Chr02:24695181..24695205 (25 bp)
TTGCTCGCGACCTGAAGGAGACCAT
LOC_Os02g40760
OsAffx.12436.1.S1_at--987--8051Chr02:24695165..24695189 (25 bp)
GGAGACCATCGAAGCAAAGGATCGT
LOC_Os02g40760
Target Sequence 
GTGAACCCGGTGCAGTTCCTCGCCGGCGTCTTCCGCTACCTGGGCGAGGACATGGCGGGCGAGCTGCTCCGCTCCGACGA
CGACGACGTGCTGCACTGCCCGAGCATCGCCGCCTCTTCCTCGCCGGAGGAGCTCCTCGCCTGTGCCGCCCGCGCCTACA
CCGGCCGCGACCGGGAGCGATGCGGTGGCAGCGTCGTGGAGCACTTGTACATGATCTGCTCCTGCTTCTGCCCGCACGCG
GCGACGACGGCGGCTCATGTGTCGGCGCCCGTCGTCGCCGGCGCTGATCACGTCCCGGCCCCGTGCGACGACAACGGTGT
CGACCTGGCTTTTACGCAGGACGAGTTGACCGCGGCGGCGGTGACCGTGGGCGAAGTGGACGAGGACGAGGTGGCCGTGG
CGGCGGCGGCGGCGACAGTGGACGCGGCCGTAGACGAGATCGTCCTGAATGCACTGGGATTCAATGAGTTTGCTCGCGAC
CTGAAGGAGACCATCGAAGCAAAGGATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis