Browse Element(s) Details


Os.55508.1.S1_at

Description gb:AK108224.1
DB_XREF= gi:32993433
TID=Os.55508.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F02, full insert sequence.
FL= gb:AK108224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4080011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein
LOC_Os02g40810Os.50341.1.S1_at10/112+24722466..24727244Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g40820Os.17730.2.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_x_at11/112+24731109..24733424expressed protein
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55508.1.S1_at--1095--291Chr02:24719042..24719066 (25 bp)
ATACCTAGACAGAGAGCGAAGCCAG
LOC_Os02g40800
Os.55508.1.S1_at--568--3431Chr02:24719064..24719088 (25 bp)
CAGAGGCGATGGTTTGGCGACGAGC
LOC_Os02g40800
Os.55508.1.S1_at--492--4071Chr02:24719084..24719108 (25 bp)
CGAGCTCGACGGAGAGAACGACGAT
LOC_Os02g40800
Os.55508.1.S1_at--565--5771Chr02:24719103..24719127 (25 bp)
GACGATGAGCTCTTCAATCCCTGGC
LOC_Os02g40800
Os.55508.1.S1_at--827--951Chr02:24719282..24719306 (25 bp)
AGGACAGCGACGACCAGTGACCGGC
LOC_Os02g40800
Os.55508.1.S1_at--585--6171Chr02:24719504..24719528 (25 bp)
GAGGATGACATCGACGAGAACGAGA
LOC_Os02g40800
Os.55508.1.S1_at--472--4091Chr02:24719515..24719539 (25 bp)
CGACGAGAACGAGATGCACATTTTT
LOC_Os02g40800
Os.55508.1.S1_at--46--10371Chr02:24719560..24719584 (25 bp)
TTTTTTCCCTCACCTGTTATAGCGT
LOC_Os02g40800
Os.55508.1.S1_at--628--10651Chr02:24719564..24719588 (25 bp)
TTCCCTCACCTGTTATAGCGTATAT
LOC_Os02g40800
Os.55508.1.S1_at--483--10191Chr02:24719577..24719601 (25 bp)
TATAGCGTATATAAAGCGGCGAATT
LOC_Os02g40800
Os.55508.1.S1_at--664--2671Chr02:24719590..24719614 (25 bp)
AAGCGGCGAATTATTGATCGTTGGC
LOC_Os02g40800
Target Sequence 
ATACCTAGACAGAGAGCGAAGCCAGAGGCGATGGTTTGGCGACGAGCTCGACGGAGAGAACGACGATGAGCTCTTCAATC
CCTGGCCACCGTCTTCAATCGTCGCCGTCCCGCACCTTCTTCCGCCGCCGGCCACCAGATCCGGGAGGGTAGCCGGTAGC
GAGCAGTGGGGAAAGAGAGGGGGCTGCAGCGGTGACCAGCGCAGCGAGTGGAGGACGGTGGCAGCCAGCAGAGCGGGTGG
AGGACAGCGACGACCAGTGACCGGCGCAGCGGGTGGAGGACGACGACGACCGGTGCGGAGGAGGAGGGTTGCGGCGATGA
CCAGCGCAGCGAGTGGAGGACGGTGGCAGCCAGCATAGCGGGTGGAGGACGACAACGACCGGTGCGGAGGAGGGCTGCGG
CGATGACCAGCGCAGCGGGTGGAGGACGGCGACCGGTGCAGCAACGATTAGTGCGGCGGCGGGAGGATGACATCGACGAG
AACGAGATGCACATTTTTTTTCTTTTCTTTCTTTTTATTTTTTTCCCTCACCTGTTATAGCGTATATAAAGCGGCGAATT
ATTGATCGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis