Browse Element(s) Details


Os.9758.1.S1_at

Description gb:AK101006.1
DB_XREF= gi:32986215
TID=Os.9758.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148E03, full insert sequence.
FL= gb:AK101006.1 gb:AK103525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4083011/11Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein
LOC_Os02g40810Os.50341.1.S1_at10/112+24722466..24727244Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g40820Os.17730.2.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_x_at11/112+24731109..24733424expressed protein
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein
LOC_Os02g40860Os.27664.1.S1_at11/112+24760940..24766881Casein kinase I, epsilon isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004776molecular_functionsuccinate-CoA ligase (GDP-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9758.1.S1_at--473--10191Chr02:24741622..24741646 (25 bp)
TATTTTGGCTTGATTTCCCCTAGAA
LOC_Os02g40830
Os.9758.1.S1_at--759--6731Chr02:24741662..24741686 (25 bp)
GTTAATAAACCTCTGTCGGCACCAA
LOC_Os02g40830
Os.9758.1.S1_at--477--5951Chr02:24741690..24741714 (25 bp)
GAGCAACCACTTCTTTTTGCCAAAG
LOC_Os02g40830
Os.9758.1.S1_at--50--6831Chr02:24741725..24741749 (25 bp)
GTTTATCTGTTTTTGCCTTGAGCAA
LOC_Os02g40830
Os.9758.1.S1_at--1040--6011Chr02:24741750..24741774 (25 bp)
GAGAGTACGGCTTTACACTTTGCAT
LOC_Os02g40830
Os.9758.1.S1_at--404--7871Chr02:24741867..24741891 (25 bp)
GGTATTGGACGCTAGCTAATGCTAT
LOC_Os02g40830
Os.9758.1.S1_at--140--10111Chr02:24741889..24741913 (25 bp)
TATGATGCCAACTAACCCTTCTTTT
LOC_Os02g40830
Os.9758.1.S1_at--156--2151Chr02:24741985..24742009 (25 bp)
ACAGAGCACCTGTGTGGCTTGTGCC
LOC_Os02g40830
Os.9758.1.S1_at--1023--3611Chr02:24742002..24742026 (25 bp)
CTTGTGCCCGTAGTTTGGCATACTT
LOC_Os02g40830
Os.9758.1.S1_at--44--2051Chr02:24742023..24742047 (25 bp)
ACTTTGATTTATTACGCCTTCCTCT
LOC_Os02g40830
Os.9758.1.S1_at--566--10671Chr02:24742041..24742065 (25 bp)
TTCCTCTCGCGATCGTGAACAAAAT
LOC_Os02g40830
Target Sequence 
TATTTTGGCTTGATTTCCCCTAGAAACATTTTGGTCTACTGTTAATAAACCTCTGTCGGCACCAAACTGAGCAACCACTT
CTTTTTGCCAAAGTTAAAGTGGAGTTTATCTGTTTTTGCCTTGAGCAAGAGAGTACGGCTTTACACTTTGCATATGCGCG
ATAACTGATTGTAAAGTCTGTAACATCTTGGCTATAGGTTATGATGACGTGTTATGATCATATTGTTCTGTTCTAATACT
GAAATGGTATTGGACGCTAGCTAATGCTATGATGCCAACTAACCCTTCTTTTGATGCTGANCTGTGCACTACATTGTGCN
GGAAATCAAGCTGAAGGTGTAGTCACTTTGTATTACATATGTCACAGAGCACCTGTGTGGCTTGTGCCCGTAGTTTGGCA
TACTTTGATTTATTACGCCTTCCTCTCGCGATCGTGAACAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis