Browse Element(s) Details


Os.50341.1.S1_at

Description gb:AK120798.1
DB_XREF= gi:37990421
TID=Os.50341.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012G01, full insert sequence.
FL= gb:AK120798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4081010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein
LOC_Os02g40810Os.50341.1.S1_at10/112+24722466..24727244Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g40820Os.17730.2.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_x_at11/112+24731109..24733424expressed protein
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50341.1.S1_at--450--6351NONE
GATGCGATTCATGCGGGATGTATCC
NONE
Os.50341.1.S1_at--570--3171Chr02:24722940..24722964 (25 bp)
AATTGGATTTGACCTCTGCGAAGAA
LOC_Os02g40810
Os.50341.1.S1_at--5--2051Chr02:24722895..24722919 (25 bp)
ACTTCCAGGCCGGTTTAATCAGCAT
LOC_Os02g40810
Os.50341.1.S1_at--454--6831Chr02:24722883..24722907 (25 bp)
GTTTAATCAGCATCATACCCCTGAC
LOC_Os02g40810
Os.50341.1.S1_at--317--10031Chr02:24722770..24722794 (25 bp)
TAGAAGGTGCATTTGTTGCTCCTGA
LOC_Os02g40810
Os.50341.1.S1_at--788--4791Chr02:24722753..24722777 (25 bp)
GCTCCTGACGCTGTGGTGCATATAA
LOC_Os02g40810
Os.50341.1.S1_at--464--7991Chr02:24722691..24722715 (25 bp)
GGATGATCACTTGCTCTAGAAACGA
LOC_Os02g40810
Os.50341.1.S1_at--797--191Chr02:24722646..24722670 (25 bp)
ATTTCGGCATTGTCCTTTCTTTAAT
LOC_Os02g40810
Os.50341.1.S1_at--937--2451Chr02:24722569..24722593 (25 bp)
AACAAAGCTTGTAGGCGTGTAACGC
LOC_Os02g40810
Os.50341.1.S1_at--395--611Chr02:24722540..24722564 (25 bp)
AGCCCCTTACTTCAATCTAATGGGA
LOC_Os02g40810
Os.50341.1.S1_at--1028--7611Chr02:24722519..24722543 (25 bp)
GGGAAACATCTTATTTCTGCTTTTG
LOC_Os02g40810
Target Sequence 
GATGCGATTCATGCGGGATGTATCCAATACGAGGGAAGAGGTACAAATGTAAGGACTGCACTGAATTAATTGGATTTGAC
CTCTGCGAAGAATGCTACAATACANAATCGAAACTTCCAGGCCGGTTTAATCAGCATCATACCCCTGACCACAGGATGGA
ACTTGATCNTTCAGCACTCTTCAATAGGTTGATGAGGCTACAAGGGATACACGAGGAGGGCCCAGGAGAGATAATCATAG
AAGGTGCATTTGTTGCTCCTGACGCTGTGGTGCATATAATAGCAGATGATCATGAGGAAATCGAGGATAACGGTGAGGAT
GATCACTTGCTCTAGAAACGAATCAGTGGTATTAANCCTGAATTTCGGCATTGTCCTTTCTTTAATGTGGAGGAGGCTAC
ATGAATCATGAATGGTACTGTATGAAATGGAGGGATTGAACAAAGCTTGTAGGCGTGTAACGCCCATAGCCCCTTACTTC
AATCTAATGGGAAACATCTTATTTCTGCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis