Browse Element(s) Details


Os.17730.2.S1_at

Description gb:AK108575.1
DB_XREF= gi:32993784
TID=Os.17730.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F12, full insert sequence.
FL= gb:AK108575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4082011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed
LOC_Os02g40800Os.55508.1.S1_at11/112+24718965..24719614expressed protein
LOC_Os02g40810Os.50341.1.S1_at10/112+24722466..24727244Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g40820Os.17730.2.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_at11/112+24731109..24733424expressed protein
LOC_Os02g40820Os.17730.1.S1_x_at11/112+24731109..24733424expressed protein
LOC_Os02g40830Os.9758.1.S1_at11/112+24735917..24742065Succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17730.2.S1_at--92--2251Chr02:24731631..24731655 (25 bp)
AAATTCCGCGCTTCTTCAAGATGAA
LOC_Os02g40820
Os.17730.2.S1_at--1082--7871Chr02:24731602..24731626 (25 bp)
GGTTCATACACGGTTTCTTCTGTAC
LOC_Os02g40820
Os.17730.2.S1_at--605--10391Chr02:24731541..24731565 (25 bp)
TTTTCGCGTGAAACCAGCAGGAGCA
LOC_Os02g40820
Os.17730.2.S1_at--645--8071Chr02:24731522..24731546 (25 bp)
GGAGCACCAATAGCTATTCTCATTT
LOC_Os02g40820
Os.17730.2.S1_at--97--6651Chr02:24731488..24731512 (25 bp)
GTTGATTCCTTGTGGCGAGACGATT
LOC_Os02g40820
Os.17730.2.S1_at--88--6591Chr02:24731467..24731491 (25 bp)
GATTGCAATCGCTGTACCCAAAGTT
LOC_Os02g40820
Os.17730.2.S1_at--584--8651Chr02:24731443..24731467 (25 bp)
TGGGCGATATCACATTGGGCACCGT
LOC_Os02g40820
Os.17730.2.S1_at--927--4031Chr02:24731371..24731395 (25 bp)
CGTTGCGCAGAAGTGGTTGGCCTCA
LOC_Os02g40820
Os.17730.2.S1_at--1078--3971Chr02:24731318..24731342 (25 bp)
CGGGAGACGCGTACTACTGGACTAA
LOC_Os02g40820
Os.17730.2.S1_at--449--1051Chr02:24731278..24731302 (25 bp)
AGGTGACTGACAGCTGCGGGCAACA
LOC_Os02g40820
Os.17730.2.S1_at--1092--571Chr02:24731156..24731180 (25 bp)
ATCCAGATGCATTCCGTAGACACAC
LOC_Os02g40820
Target Sequence 
AAATTCCGCGCTTCTTCAAGATGAACTTTGGTTCATACACGGTTTCTTCTGTACAATCTCAAGCTCAATTTGAAACGAGA
ACCGGAAACATTTTCGCGTGAAACCAGCAGGAGCACCAATAGCTATTCTCATTTCAGCAAGGTGTTGATTCCTTGTGGCG
AGACGATTGCAATCGCTGTACCCAAAGTTGGGCGATATCACATTGGGCACCGTCCTTGCGATCTGATCATAATCAACAAC
CATTCCACATTAGTGACGACCGTTGCGCAGAAGTGGTTGGCCTCACTGCTGTGTCGACAGCGACGGAGATACACGGGAGA
CGCGTACTACTGGACTAAGAGGTACAACACGCCAGGTGACTGACAGCTGCGGGCAACAACAAAAGATAACCGATTGGGGC
AAAGGTAGGGAGGCAGGAATTGGCGCCATCAGAATACAGTGGTTTTGGTGTGATATAAGTGCAACACTAGTGTTTATCCA
GATGCATTCCGTAGACACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17730.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis