Browse Element(s) Details


OsAffx.12433.1.S1_at

Description tigr:9630.m03934
TID=OsAffx.12433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ammonium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4071011/11Ammonium transporter 1, member 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12433.1.S1_at--786--3931Chr02:24678864..24678888 (25 bp)
CGGCGTGGGTCCTCATCGGCTGCAA
LOC_Os02g40710
OsAffx.12433.1.S1_at--616--491Chr02:24678878..24678902 (25 bp)
ATCGGCTGCAACAAGCTGTCGCTGA
LOC_Os02g40710
OsAffx.12433.1.S1_at--307--2691Chr02:24678890..24678914 (25 bp)
AAGCTGTCGCTGATTCTCAAGTTCG
LOC_Os02g40710
OsAffx.12433.1.S1_at--14--9371Chr02:24678912..24678936 (25 bp)
TCGACGACCCGCTGGAGGCGACGCA
LOC_Os02g40710
OsAffx.12433.1.S1_at--92--3471Chr02:24678991..24679015 (25 bp)
CAGGGAGTACGTCGAGCTGATCTAC
LOC_Os02g40710
OsAffx.12433.1.S1_at--337--10591Chr02:24679065..24679089 (25 bp)
TTCTCGCGGCGCACATCGTGCAGAT
LOC_Os02g40710
OsAffx.12433.1.S1_at--274--511Chr02:24679079..24679103 (25 bp)
ATCGTGCAGATCCTGGTGATCGTCG
LOC_Os02g40710
OsAffx.12433.1.S1_at--1034--1831Chr02:24679127..24679151 (25 bp)
ACGCTCTTCTACGTGCTGCACAGGT
LOC_Os02g40710
OsAffx.12433.1.S1_at--404--7171Chr02:24679166..24679190 (25 bp)
GTCTCGCCCGCGACAGAGATGGAAG
LOC_Os02g40710
OsAffx.12433.1.S1_at--367--8511Chr02:24679185..24679209 (25 bp)
TGGAAGGCATGGACCCGACGTGCCA
LOC_Os02g40710
OsAffx.12433.1.S1_at--2--1951Chr02:24679277..24679301 (25 bp)
ACGGCTCGCGTGGAGCCCAGAAAGT
LOC_Os02g40710
Target Sequence 
CGGCGTGGGTCCTCATCGGCTGCAACAAGCTGTCGCTGATTCTCAAGTTCGACGACCCGCTGGAGGCGACGCAGCTGCAC
GCCGGGTGCGGCGCGTGGGGGATCATCTTCACCGCGCTGTTCGCGCGCAGGGAGTACGTCGAGCTGATCTACGGGGTGCC
GGGGAGGCCGTACGGGCTGTTCATGGGCGGCGGCGGGAGGCTTCTCGCGGCGCACATCGTGCAGATCCTGGTGATCGTCG
GGTGGGTCAGCGCCACCATGGGGACGCTCTTCTACGTGCTGCACAGGTTCGGGCTGCTCCGCGTCTCGCCCGCGACAGAG
ATGGAAGGCATGGACCCGACGTGCCACGGCGGGTTCGGGTACGTGGACGAGGACGAAGGCGAGCGCCGCGTCAGGGCCAA
GTCGGCGGCGGAGACGGCTCGCGTGGAGCCCAGAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis