Browse Element(s) Details


OsAffx.12434.1.S1_at

Description tigr:9630.m03935
TID=OsAffx.12434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4072011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12434.1.S1_at--257--10731Chr02:24681647..24681671 (25 bp)
TTGAATTTACCCATTTTCCACGCTT
LOC_Os02g40720
OsAffx.12434.1.S1_at--219--4131Chr02:24681506..24681651 (25 bp)
CGCTTGCGTACTTCTTATCTTAATC
LOC_Os02g40720
OsAffx.12434.1.S1_at--811--2471Chr02:24681478..24681502 (25 bp)
AACACGGAAATGTCGCCGTCGTGAT
LOC_Os02g40720
OsAffx.12434.1.S1_at--945--1651Chr02:24681256..24681280 (25 bp)
AGCGCGGCACATGCAGATGTAGGCA
LOC_Os02g40720
OsAffx.12434.1.S1_at--577--3851Chr02:24681211..24681235 (25 bp)
CTGAAGCCCTGAACCGCGCGGAGAA
LOC_Os02g40720
OsAffx.12434.1.S1_at--951--6091Chr02:24681167..24681191 (25 bp)
GAGTCCCTTCCGTGCGAGAAGCCAC
LOC_Os02g40720
OsAffx.12434.1.S1_at--800--331Chr02:24681047..24681071 (25 bp)
ATAATAGGCCGTTCGCAGAAGCGTA
LOC_Os02g40720
OsAffx.12434.1.S1_at--602--2931Chr02:24681023..24681047 (25 bp)
AAGGAAGGCCTTTCATGGCTCATCT
LOC_Os02g40720
OsAffx.12434.1.S1_at--121--10331Chr02:24681013..24681037 (25 bp)
TTTCATGGCTCATCTGTCACTTGGG
LOC_Os02g40720
OsAffx.12434.1.S1_at--646--9891Chr02:24680971..24680995 (25 bp)
TACTTTGCGATTGGGCCTCAGCCAT
LOC_Os02g40720
OsAffx.12434.1.S1_at--160--3371Chr02:24680953..24680977 (25 bp)
CAGCCATACGTTCCTTAGCGGAAAA
LOC_Os02g40720
Target Sequence 
TTGAATTTACCCATTTTCCACGCTTGCGTACTTCTTATCTTAATCAGGAACACGGAAATGTCGCCGTCGTGATAGGGGGG
GCCGAGAAATCGAAATGCTCGAGAGGTGGGGGTGGAAGCACCACGGAGAGGAGCGGAGAGGGAGGGCGCGGATCATCAAC
GGCGAGCCGCGAGCCGCACGGGAAGCGCGGCACATGCAGATGTAGGCAATGGCGCACGGCGGCGCGGCCTGAAGCCCTGA
ACCGCGCGGAGAACGACGCTCTCCGTCTCTCCGAGTCCCTTCCGTGCGAGAAGCCACTACCGCACGGTGCGCGCGGGGAT
GCAGCCATGCAGGACGAACGGGGCGCGCGGGGGAGTGCAGGCCGCAGTCCGCAGTCCGCAGGGCAAGCGGTCATAATAGG
CCGTTCGCAGAAGCGTAAGGAAGGCCTTTCATGGCTCATCTGTCACTTGGGGGTTGGGCGGCTGGGCCTACTTTGCGATT
GGGCCTCAGCCATACGTTCCTTAGCGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis