Browse Element(s) Details


Os.37865.1.S1_at

Description gb:AK058853.1
DB_XREF= gi:32968871
TID=Os.37865.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-A12, full insert sequence.
FL= gb:AK058853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4070011/11enzyme of the cupin superfamily, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37865.1.S1_at--451--1231Chr02:24671126..24671150 (25 bp)
AGTTCGATTCATCTTGACGTCTGTC
LOC_Os02g40700
Os.37865.1.S1_at--896--3151Chr02:24671181..24671205 (25 bp)
AATTCGGTGACTAATTCGCTTCCTG
LOC_Os02g40700
Os.37865.1.S1_at--827--3151Chr02:24671193..24671217 (25 bp)
AATTCGCTTCCTGATTAGTTCGGTG
LOC_Os02g40700
Os.37865.1.S1_at--252--151Chr02:24671206..24671230 (25 bp)
ATTAGTTCGGTGACTGCGCTTAGCC
LOC_Os02g40700
Os.37865.1.S1_at--1110--4571Chr02:24671221..24671245 (25 bp)
GCGCTTAGCCTCATTCTGTAGCTAA
LOC_Os02g40700
Os.37865.1.S1_at--516--10491Chr02:24671261..24671285 (25 bp)
TTAAGCCCGTGCCTAATGTGATAAT
LOC_Os02g40700
Os.37865.1.S1_at--45--8691Chr02:24671277..24671301 (25 bp)
TGTGATAATGTCTCTTCTTCTCTGC
LOC_Os02g40700
Os.37865.1.S1_at--246--4871Chr02:24671354..24671378 (25 bp)
GCTAGTGGTTATTCAGGAGCCCCAA
LOC_Os02g40700
Os.37865.1.S1_at--317--5811Chr02:24671370..24671394 (25 bp)
GAGCCCCAAAAACCGGTCAATGCAG
LOC_Os02g40700
Os.37865.1.S1_at--387--1191Chr02:24671406..24671430 (25 bp)
AGTATTCTTGTTTATTCCTCCGAGT
LOC_Os02g40700
Os.37865.1.S1_at--479--7351Chr02:24671429..24671453 (25 bp)
GTGCAATCCACTTTGAATGCTCTCT
LOC_Os02g40700
Target Sequence 
AGTTCGATTCATCTTGACGTCTGTCTCGTCGTCGATCGATCTCTCTCCCTCGCCGAATTCGGTGACTAATTCGCTTCCTG
ATTAGTTCGGTGACTGCGCTTAGCCTCATTCTGTAGCTAATTTGTTGCTAGATAATTAAGCCCGTGCCTAATGTGATAAT
GTCTCTTCTTCTCTGCGTGTAAAAAAAAANTGGTGTGCGAGGGGGCAGGGGCATCTAGCCCCTGAGAGGCTAGTGGTTAT
TCAGGAGCCCCAAAAACCGGTCAATGCAGGGGCTGTTCAAAGTATTCTTGTTTATTCCTCCGAGTGCAATCCACTTTGAA
TGCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis