Browse Element(s) Details


OsAffx.12435.1.S1_at

Description tigr:9630.m03938
TID=OsAffx.12435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC027035 PPR-repeat protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4075011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40700Os.37865.1.S1_at11/112+24670494..24671465enzyme of the cupin superfamily, putative, expressed
LOC_Os02g40710OsAffx.12433.1.S1_at11/112+24677764..24679336Ammonium transporter 1, member 1, putative, expressed
LOC_Os02g40720OsAffx.12434.1.S1_at11/112+24680916..24681711hypothetical protein
LOC_Os02g40730Os.9328.1.S1_at11/112+24685015..24686867Ammonium transporter 1, member 2, putative, expressed
LOC_Os02g40739NANA2+24688772..24688971NA
LOC_Os02g40750OsAffx.12435.1.S1_at11/112+24690987..24692579pentatricopeptide, putative
LOC_Os02g40760OsAffx.12436.1.S1_at11/112+24695105..24695809hypothetical protein
LOC_Os02g40770Os.53850.1.S1_at10/112+24702205..24711417Pre-SET motif family protein, expressed
LOC_Os02g40784Os.8816.1.S1_at11/112+24712178..24718242CER1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12435.1.S1_at--996--10711Chr02:24691496..24691520 (25 bp)
TTGAATGCATGCACCCATGGAGGGT
LOC_Os02g40750
OsAffx.12435.1.S1_at--7--7931Chr02:24691397..24691421 (25 bp)
GGTTGTGTTGTAGATCTTCTTTGTC
LOC_Os02g40750
OsAffx.12435.1.S1_at--1123--10531Chr02:24691381..24691405 (25 bp)
TTCTTTGTCGAGCAGGACGGTTTCA
LOC_Os02g40750
OsAffx.12435.1.S1_at--295--5571Chr02:24691329..24691353 (25 bp)
GAAAGTTCAACCAGACGAAGTCATT
LOC_Os02g40750
OsAffx.12435.1.S1_at--33--1411Chr02:24691271..24691295 (25 bp)
AGACACCTAGAACTGGCCGAGCATG
LOC_Os02g40750
OsAffx.12435.1.S1_at--414--4511Chr02:24691256..24691280 (25 bp)
GCCGAGCATGCTATAAGAAACTTGT
LOC_Os02g40750
OsAffx.12435.1.S1_at--980--7391Chr02:24691199..24691223 (25 bp)
GTGATGCTTGCAAACTTATACAGTG
LOC_Os02g40750
OsAffx.12435.1.S1_at--484--1011Chr02:24691084..24691108 (25 bp)
AGGTTGATCGCAAAACTCGCCGGTT
LOC_Os02g40750
OsAffx.12435.1.S1_at--510--2552Chr02:19284266..19284407 (25 bp)
AACTCGCCGGTTTTATTCTGGTGAT
NONE
OsAffx.12435.1.S1_at--387--711Chr02:24691048..24691072 (25 bp)
ATGATGGTCACCCTGAGTCAGAGGA
LOC_Os02g40750
OsAffx.12435.1.S1_at--316--6171Chr02:24691028..24691052 (25 bp)
GAGGATATCTATGACACTCTTGATA
LOC_Os02g40750
Target Sequence 
TTGAATGCATGCACCCATGGAGGGTTTGTTGATGAAGGTCTTAGATACTTTGAACTGATGTGTGATGAGCATGGAATTGA
GCCAGAGATTGAGCATTATGGTTGTGTTGTAGATCTTCTTTGTCGAGCAGGACGGTTTCAGGATGCGATGAATTTTATCA
ATGATATGAAAGTTCAACCAGACGAAGTCATTTGGGGGTCATTACTCAATGCCTGTAGAATACACAGACACCTAGAACTG
GCCGAGCATGCTATAAGAAACTTGTTGGATTTGAATCCAAGTAATGCTAATTATGTAGTGATGCTTGCAAACTTATACAG
TGAAGGTGGCTTCTGGGAAGAGGTTAGGAAAGTAAGGAAGCTCATGAAGGAGGATGTTACAGGCAAGAAGCTGCCTGGTT
GTAGCTGGATTGAGGTTGATCGCAAAACTCGCCGGTTTTATTCTGGTGATGATGGTCACCCTGAGTCAGAGGATATCTAT
GACACTCTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis