Browse Element(s) Details


Os.2413.1.S1_x_at

Description gb:AF210816.1
DB_XREF= gi:8745340
TID=Os.2413.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2413 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica phragmoplast-associated kinesin-related protein 1 mRNA, partial cds
DEF=Oryza sativa subsp. japonica phragmoplast-associated kinesin-related protein 1 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g282607/11Kinesin-related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28220OsAffx.14013.2.S1_at10/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.30648.1.S1_at3/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.31267.1.S1_at2/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.29480.2.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220OsAffx.19695.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28220Os.57082.1.S1_at1/114+16490338..16493211hypothetical protein
LOC_Os04g28234Os.50454.1.S2_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.2.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28234Os.50454.1.S1_x_at11/114+16497738..16506043Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28250Os.9817.1.S1_at11/114+16506608..16507443cystatin, putative, expressed
LOC_Os04g28260OsAffx.26199.1.S1_x_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.26199.1.S1_at11/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.2413.1.S1_x_at7/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260Os.11796.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28260OsAffx.28358.1.S1_at1/114+16511596..16520003Kinesin-related family protein, expressed
LOC_Os04g28270OsAffx.26200.1.S1_at11/114+16526236..16526750hypothetical protein
LOC_Os04g28270Os.9328.1.S1_at1/114+16526236..16526750hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2413.1.S1_x_at--281--9911Chr04:16519567..16519591 (25 bp)
TACTCTGGCCATTGAAGCTTGCGAC
LOC_Os04g28260
Os.2413.1.S1_x_at--359--3411Chr04:16519634..16519658 (25 bp)
CAGCAATGGCGGGAGGAGTTCAACC
LOC_Os04g28260
Os.2413.1.S1_x_at--860--1211Chr04:16519650..16519674 (25 bp)
AGTTCAACCAGCAGGGCGGGTCGTT
LOC_Os04g28260
Os.2413.1.S1_x_at--832--6871Chr04:16519778..16519802 (25 bp)
GTATTGCTAGCATTGCATGTTGTAC
LOC_Os04g28260
Os.2413.1.S1_x_at--744--9051Chr04:16519791..16519815 (25 bp)
TGCATGTTGTACCACCAGCTGGTGA
LOC_Os04g28260
Os.2413.1.S1_x_at--760--1071Chr04:16519883..16519907 (25 bp)
AGGGCGCGGCAAGATTCTTCGGATT
LOC_Os04g28260
Os.2413.1.S1_x_at--117--6171Chr04:16519924..16519948 (25 bp)
GAGGTTGTATTGATCTGTCTTGTAA
LOC_Os04g28260
Os.2413.1.S1_x_at--909--7051Chr04:16520031..16520055 (25 bp)
GTAAGTTGCAAAGATGTTCATGTCA
NONE
Os.2413.1.S1_x_at--680--8791Chr04:16520045..16520069 (25 bp)
TGTTCATGTCAACAGGTACTTCATC
NONE
Os.2413.1.S1_x_at--54--7851Chr04:16520059..16520083 (25 bp)
GGTACTTCATCTCACAATGTTTGGT
NONE
Os.2413.1.S1_x_at--389--3551Chr04:16520066..16520085 (20 bp)
CATCTCACAATGTTTGGTCCCCAAA
NONE
Target Sequence 
TACTCTGGCCATTGAAGCTTGCGACATGGAGACTNCAAAGTATGANACGGCTGGGAGCCCCGGTGACCAGCAATGGCGGG
AGGAGTTCAACCAGCAGGGCGGGTCGTTTGAGGTCNNNNANANNNNNGNNCNNNANNNGNGNNNNNNNNNNNACNANNAN
NGTAACATCTNGATGATGATTTGCACACTNNTTNGTTCAGTTCTTTGTACNTTTGTATTGCTAGCATTGCATGTTGTACC
ACCAGCTGGTGAGCACANGAGAGGAAGAAGAGAGTTAATCCTGAAGATNTGTGTACTACCTNTTCACTGTCTTGTGNGGA
GGGCGCGGCAAGATTCTTCGGATTCTCCCCCCCAAAAAAAGAGGTTGTATTGATCTGTCTTGTAAATTCAGATGGACACT
TTACATATGACAAGAGCAACAACGATGTTCATGTTCNTGTNNNNNNNNNNNNNNNNNCAATTTGTCAGTAAGTTGCAAAG
ATGTTCATGTCAACAGGTACTTCATCTCACAATGTTTGGTCCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2413.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis