Browse Element(s) Details


Os.47885.1.A1_at

Description gb:AK109836.1
DB_XREF= gi:32995045
TID=Os.47885.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-D08, full insert sequence.
FL= gb:AK109836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3430011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34250NANA12+20729859..20733108transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34260Os.47463.1.S1_x_at2/1112+20735503..20739817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g34270OsAffx.19962.1.S1_at11/1112+20741638..20744077F-box domain containing protein
LOC_Os12g34280NANA12+20746083..20746765hypothetical protein
LOC_Os12g34290OsAffx.32015.1.S1_at11/1112+20750484..20753888F-box domain containing protein
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein
LOC_Os12g34320Os.52252.1.S1_at11/1112+20769394..20772085D-mannose binding lectin family protein, expressed
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47885.1.A1_at--984--8451Chr12:20756919..20756943 (25 bp)
TGGCGCAAGCGTAACCAAGCTCATT
LOC_Os12g34300
Os.47885.1.A1_at--368--8831Chr12:20758091..20758115 (25 bp)
TGATTCCACTAGATCATCTCCGGAT
LOC_Os12g34300
Os.47885.1.A1_at--484--6251Chr12:20758113..20758137 (25 bp)
GATGGTAGACATACGTGACTTCCTA
LOC_Os12g34300
Os.47885.1.A1_at--691--8951Chr12:20758128..20758152 (25 bp)
TGACTTCCTACCTTTCAATGACCAA
LOC_Os12g34300
Os.47885.1.A1_at--351--10031Chr12:20758154..20758178 (25 bp)
TAGAACTCGTATGTGCACTGATTGC
LOC_Os12g34300
Os.47885.1.A1_at--990--7291Chr12:20758181..20758205 (25 bp)
GTGCGCCGGCACTGGAGAAAATGAT
LOC_Os12g34300
Os.47885.1.A1_at--1126--6591Chr12:20758203..20758227 (25 bp)
GATTGTAGCATTGCACGAGTCATAT
LOC_Os12g34300
Os.47885.1.A1_at--945--6211Chr12:20758258..20758282 (25 bp)
GAGGCGTATTTATGCATTCCAAGCT
LOC_Os12g34300
Os.47885.1.A1_at--27--2291Chr12:20758398..20758422 (25 bp)
AAATGCCTTATTACTGTTCGATATG
LOC_Os12g34300
Os.47885.1.A1_at--425--751Chr12:20758438..20758462 (25 bp)
ATGTATGCATGTATCCTTGGAGTTG
LOC_Os12g34300
Os.47885.1.A1_at--167--1252Chr12:20758458..20758482 (25 bp)
AGTTGATCTGTTATACTCCCTCCAT
LOC_Os12g34300
Target Sequence 
TGGCGCAAGCGTAACCAAGCTCATTGCAAAGTTTAGAAGAATTGAGTATCTCTCCATTGACATAGACAAAAAGGCCGGTG
ATTGTACAAATTTTGACTGCAAATGTGAGCAGCATAAAGGCTGGAGCAACGAGATGATTCCACTAGATCATCTCCGGATG
GTAGACATACGTGACTTCCTACCTTTCAATGACCAAATAGAACTCGTATGTGCACTGATTGCGAGTGCGCCGGCACTGGA
GAAAATGATTGTAGCATTGCACGAGTCATATGAAGAGACAAGAGAGCGTACAAATAACATGGAGGCGTATTTATGCATTC
CAAGCTGTGGTGGTCGTTGGACCCCTTGTGCTTGGAATGGGGGTAAATTTGGCAGTGCTACTAAATATGAGTGGAAACCA
TGTAAGCGGAAGCGGTCAGAAGAAGGGGTGGAGAAGGTTTGAAATGCCTTATTACTGTTCGATATGAAATACCTTTATGA
AATGTATGCATGTATCCTTGGAGTTGATCTGTTATACTCCCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47885.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis