Browse Element(s) Details


Os.11418.1.S1_at

Description gb:AK069942.1
DB_XREF= gi:32979966
TID=Os.11418.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039O07, full insert sequence.
FL= gb:AK069942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3435011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34300Os.47885.1.A1_at11/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34300OsAffx.31263.1.S1_x_at1/1112+20755376..20758550F-box domain containing protein, expressed
LOC_Os12g34310OsAffx.19963.1.S1_at11/1112+20762595..20765232F-box domain containing protein
LOC_Os12g34320Os.52252.1.S1_at11/1112+20769394..20772085D-mannose binding lectin family protein, expressed
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein
LOC_Os12g34360NANA12+20795523..20798205expressed protein
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed
LOC_Os12g34380Os.12023.1.S1_at5/1112+20805121..20809489Glutathione synthetase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11418.1.S1_at--772--31Chr12:20783416..20783440 (25 bp)
ATTGTTATTCTTTATGGTCCGCAGG
LOC_Os12g34350
Os.11418.1.S1_at--517--5991Chr12:20783364..20783388 (25 bp)
GAGACCAACCTGTTTTGGCTAATCA
LOC_Os12g34350
Os.11418.1.S1_at--443--3071Chr12:20783344..20783368 (25 bp)
AATCATTAGGGCATTTGTTGTTTCC
LOC_Os12g34350
Os.11418.1.S1_at--308--5411Chr12:20783227..20783251 (25 bp)
GAAGCTCCATTTTGACGCGATGCAT
LOC_Os12g34350
Os.11418.1.S1_at--129--2091Chr12:20783200..20783224 (25 bp)
ACATATTTGTTTTCTGTGCCGCACG
LOC_Os12g34350
Os.11418.1.S1_at--709--9451Chr12:20783188..20783212 (25 bp)
TCTGTGCCGCACGTTAGGTTGGTTG
LOC_Os12g34350
Os.11418.1.S1_at--682--7851Chr12:20783168..20783192 (25 bp)
GGTTGGTAGGCTTCAGGAGTTTATT
LOC_Os12g34350
Os.11418.1.S1_at--866--4951Chr12:20783121..20783145 (25 bp)
GCATTTGGTGAACTTTCTCAGCCTT
LOC_Os12g34350
Os.11418.1.S1_at--1021--3671Chr12:20783109..20783133 (25 bp)
CTTTCTCAGCCTTTTCAACTCTAAA
LOC_Os12g34350
Os.11418.1.S1_at--726--7391Chr12:20783047..20783071 (25 bp)
GTGAGGTATGTGCTTCTCTTATATA
LOC_Os12g34350
Os.11418.1.S1_at--675--2491Chr12:20783011..20783035 (25 bp)
AACAGTAGTATCCACAGATTCTCCT
LOC_Os12g34350
Target Sequence 
ATTGTTATTCTTTATGGTCCGCAGGAAAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTA
GGGCATTTGTTGTTTCCNATGTCCNAAGATGTGGGCAAAATGAGAGGATGTGCNAAAAGACACTTTCATCTGGCACTGNC
AGCCNTGGGATGCCCNTCTGCCTACTGGCNAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGT
GCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCT
CAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATAT
ATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis