Browse Element(s) Details


Os.17717.1.S1_at

Description gb:AK067915.1
DB_XREF= gi:32977933
TID=Os.17717.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122A02, full insert sequence.
FL= gb:AK067915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3437010/11Adaptor complexes medium subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34330Os.54136.1.S1_at10/1112+20772833..20778265PHD-finger family protein, expressed
LOC_Os12g34340Os.16910.1.S1_at10/1112+20780843..20782892pentatricopeptide, putative, expressed
LOC_Os12g34350Os.11418.1.S1_at11/1112+20782970..20787310expressed protein
LOC_Os12g34360NANA12+20795523..20798205expressed protein
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed
LOC_Os12g34380Os.12023.1.S1_at5/1112+20805121..20809489Glutathione synthetase, chloroplast precursor, putative, expressed
LOC_Os12g34390OsAffx.32016.1.S1_at11/1112+20814521..20816387hypothetical protein
LOC_Os12g34400OsAffx.19965.1.S1_at11/1112+20816565..20817807hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17717.1.S1_at--669--7091Chr12:20803971..20803995 (25 bp)
GTCAGACTCTGGTATTCTAAACTTG
LOC_Os12g34370
Os.17717.1.S1_at--1086--6591Chr12:20804003..20804027 (25 bp)
GATTGGGTGCAATACCGTTTTCGAG
LOC_Os12g34370
Os.17717.1.S1_at--775--5411Chr12:20804053..20804077 (25 bp)
GAAGCCATGACCTTATTGGGCAATA
LOC_Os12g34370
Os.17717.1.S1_at--27--3591Chr12:20804084..20804108 (25 bp)
CATTTCGTAGGATTACTAGCAGCAT
LOC_Os12g34370
Os.17717.1.S1_at--839--8811Chr12:20804108..20804132 (25 bp)
TGTTGAGATAACTTCCATGTCAGGA
LOC_Os12g34370
Os.17717.1.S1_at--110--5511Chr12:20804154..20804178 (25 bp)
GAAAAAACCAACTCATTGTCCACAA
LOC_Os12g34370
Os.17717.1.S1_at--173--8711Chr12:20804170..20804194 (25 bp)
TGTCCACAAACATGAGACTTGGCAT
LOC_Os12g34370
Os.17717.1.S1_at--892--7391Chr12:20804216..20804240 (25 bp)
GTGATTGAGCCCAAACAGGTCCCAA
LOC_Os12g34370
Os.17717.1.S1_at--956--10411Chr12:20804292..20804316 (25 bp)
TTATTTTGTCAGTCCTTGACAGAGG
LOC_Os12g34370
Os.17717.1.S1_at--681--5311Chr12:20804328..20804352 (25 bp)
GAAGGTCCATTGAACCGAGACATTT
LOC_Os12g34370
Os.17717.1.S1_at--393--5491Chr12:20804447..20804471 (25 bp)
GAACATAGGGCAACATTTTCCTCAA
NONE
Target Sequence 
GTCAGACTCTGGTATTCTAAACTTGAGTTCATGATTGGGTGCAATACCGTTTTCGAGAAAAAAATTGATTGGGTGCAATA
TTGAAGCCATGACCTTATTGGGCAATAAAATTCCATTTCGTAGGATTACTAGCAGCATGTTGAGATAACTTCCATGTCAG
GAAATATGGTACTATATCAGCAAGAAAAAACCAACTCATTGTCCACAAACATGAGACTTGGCATGATAAATCTGTATGAT
TACTGGTGATTGAGCCCAAACAGGTCCCAATTTTCTGGGCCTCCTTNTNTAGGTTGTTAGATAGAGATGTTTCATCTTTA
TTTATTTTGTCAGTCCTTGACAGAGGAATGTCATGTTGAAGGTCCATTGAACCGAGACATTTTNTTTTGNTAATGTCATG
CATGATGCCATTGAGATAGATGATGTAATATTCGGATTGCATTGAAAGGAATAACATGNCCGGCCAAAAAAACAAGGAAC
ATAGGGCAACATTTTCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis