Browse Element(s) Details


OsAffx.19965.1.S1_at

Description tigr:9640.m03322
TID=OsAffx.19965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3440011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34360NANA12+20795523..20798205expressed protein
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed
LOC_Os12g34380Os.12023.1.S1_at5/1112+20805121..20809489Glutathione synthetase, chloroplast precursor, putative, expressed
LOC_Os12g34390OsAffx.32016.1.S1_at11/1112+20814521..20816387hypothetical protein
LOC_Os12g34400OsAffx.19965.1.S1_at11/1112+20816565..20817807hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19965.1.S1_at--467--10791Chr12:20817294..20817318 (25 bp)
TTGATTCTGATGAGGGTTCCATATC
LOC_Os12g34400
OsAffx.19965.1.S1_at--735--3011Chr12:20817348..20817372 (25 bp)
AATGCTGTTCTTCACGAGACGATCA
LOC_Os12g34400
OsAffx.19965.1.S1_at--283--5991Chr12:20817363..20817387 (25 bp)
GAGACGATCAATTTCATATACAGCA
LOC_Os12g34400
OsAffx.19965.1.S1_at--298--10111Chr12:20817390..20817414 (25 bp)
TATGGTTGCCTTCCTAAGTTCAATG
LOC_Os12g34400
OsAffx.19965.1.S1_at--541--2991Chr12:20817464..20817488 (25 bp)
AATGTTTCTGGACTTCATTCGCCAC
LOC_Os12g34400
OsAffx.19965.1.S1_at--458--7031Chr12:20817490..20817514 (25 bp)
GTACAGCTCACCGTCTCCAAAGAAA
LOC_Os12g34400
OsAffx.19965.1.S1_at--331--9791Chr12:20817517..20817541 (25 bp)
TAAGCTTGACACCACATCAGCATGA
LOC_Os12g34400
OsAffx.19965.1.S1_at--763--1531Chr12:20817535..20817559 (25 bp)
AGCATGAGCTCATACTTCTGGTGAT
LOC_Os12g34400
OsAffx.19965.1.S1_at--724--7751Chr12:20817554..20817578 (25 bp)
GGTGATGTATCCTTTGTTGTTGCCA
LOC_Os12g34400
OsAffx.19965.1.S1_at--140--6651Chr12:20817569..20817593 (25 bp)
GTTGTTGCCACTACTTCAAGAAGCT
LOC_Os12g34400
OsAffx.19965.1.S1_at--809--9772Chr12:20818140..20818162 (23 bp)
TAAGGTCTGTGTTGGAGGTTACTAT
NONE
Target Sequence 
TTGATTCTGATGAGGGTTCCATATCATGAAAAATGGAGAATAATTGCAAATCAAAATGCTGTTCTTCACGAGACGATCAA
TTTCATATACAGCAATTATGGTTGCCTTCCTAAGTTCAATGAAAAAGGTGTACTTTATACTGAAATTGAAATTCAGCTAC
ATGAGGCTGAAATGTTTCTGGACTTCATTCGCCACGGTACAGCTCACCGTCTCCAAAGAAACATAAGCTTGACACCACAT
CAGCATGAGCTCATACTTCTGGTGATGTATCCTTTGTTGTTGCCACTACTTCAAGAAGCTATTCTGGATGTACTTGGAGA
GCCAGAGTTCAGAAAGATACTGTTAAGGTCTGTGTTGGAGGTTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis