Browse Element(s) Details


Os.34869.1.A1_at

Description gb:AK069805.1
DB_XREF= gi:32979829
TID=Os.34869.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030L10, full insert sequence.
FL= gb:AK069805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3444011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34370Os.17717.1.S1_at10/1112+20799457..20804469Adaptor complexes medium subunit family protein, expressed
LOC_Os12g34380Os.12023.1.S1_at5/1112+20805121..20809489Glutathione synthetase, chloroplast precursor, putative, expressed
LOC_Os12g34390OsAffx.32016.1.S1_at11/1112+20814521..20816387hypothetical protein
LOC_Os12g34400OsAffx.19965.1.S1_at11/1112+20816565..20817807hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34869.1.A1_at--1072--8011Chr12:20828870..20828894 (25 bp)
GGAGGAGGCAGGATACAATTACGAT
LOC_Os12g34440
Os.34869.1.A1_at--174--9931Chr12:20828889..20828913 (25 bp)
TACGATGAAACATGGCTCCTTGCAA
LOC_Os12g34440
Os.34869.1.A1_at--522--471Chr12:20828978..20829002 (25 bp)
ATCTCCTGAGATGCTTGCATTTGCT
LOC_Os12g34440
Os.34869.1.A1_at--144--3151Chr12:20829010..20829034 (25 bp)
AATTCTGGAGGTTTGAGCCATTCCT
LOC_Os12g34440
Os.34869.1.A1_at--1101--171Chr12:20829055..20829077 (23 bp)
ATTTCAATCTGCGATGCCCCAGGTT
LOC_Os12g34440
Os.34869.1.A1_at--635--6351Chr12:20829067..20829183 (25 bp)
GATGCCCCAGGTTATCCAAGCAAAT
LOC_Os12g34440
Os.34869.1.A1_at--183--5251Chr12:20829191..20829215 (25 bp)
GAATCAGCTCTACTGCCTCAGAAAA
LOC_Os12g34440
Os.34869.1.A1_at--719--3131Chr12:20829219..20829243 (25 bp)
AATTCGGTTGTGCTGAATACCTTCC
LOC_Os12g34440
Os.34869.1.A1_at--215--10671Chr12:20829240..20829264 (25 bp)
TTCCATTGGATGGTCCCTCTCTTGC
LOC_Os12g34440
Os.34869.1.A1_at--566--4291Chr12:20829255..20829279 (25 bp)
CCTCTCTTGCCATATTCTGAATTCT
LOC_Os12g34440
Os.34869.1.A1_at--1141--6271Chr12:20829361..20829385 (25 bp)
GATGTATCTTCCAAACTCTGATGTG
LOC_Os12g34440
Target Sequence 
GGAGGAGGCAGGATACAATTACGATGAAACATGGCTCCTTGCAATTGATATGAGTAAAATGACCTTGAAAATGTCNNTTC
CATATATCAATGATGAAATGGGAGATCCATCTCCTGAGATGCTTGCATTTGCTGAGGATAAATTCTGGAGGTTTGAGCCA
TTCCTCGCTGCTGACTTCNTCCNAGGCATTTCAATCTGCGATGCCCCAGGTTATCCAAGCAAATTTGCATGGAATCAGCT
CTACTGCCTCAGAAAAGAAAATTCGGTTGTGCTGAATACCTTCCATTGGATGGTCCCTCTCTTGCCATATTCTGAATTCT
GATGTGAAGTGAACTTTTCTTCTGAATTCTGATGCGAACGGAGGTAATTCTGATGTGAACGGAGGTAATTCTGATGGGAA
TGATGTATCTTCCAAACTCTGATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34869.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis