Browse Element(s) Details


OsAffx.32020.2.S1_at

Description tigr:9640.m03330
TID=OsAffx.32020.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34410OsAffx.32017.1.S1_x_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34410OsAffx.32017.1.S1_at11/1112+20819337..20821283hypothetical protein
LOC_Os12g34419NANA12+20822908..20823369hypothetical protein
LOC_Os12g34430NANA12+20824734..20825060expressed protein
LOC_Os12g34440Os.34869.1.A1_at11/1112+20827619..20829539expressed protein
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein
LOC_Os12g34510Os.4755.1.S1_at11/1112+20854827..20855670Histone H2A, putative, expressed
LOC_Os12g34524Os.51257.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_x_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524OsAffx.23331.4.S1_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.6093.2.S2_at1/1112+20856662..20866142Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32020.2.S1_at--64--2891Chr12:20843547..20843571 (25 bp)
AAGGGTAACCATGGCACACTGCACA
LOC_Os12g34480
OsAffx.32020.2.S1_at--672--852Chr12:20843537..20843561 (25 bp)
ATGGCACACTGCACACCGCGCTAAA
LOC_Os12g34480
OsAffx.32020.2.S1_at--932--9011Chr12:20843528..20843552 (25 bp)
TGCACACCGCGCTAAATTGCAACTA
LOC_Os12g34480
OsAffx.32020.2.S1_at--12--4431Chr12:20843520..20843544 (25 bp)
GCGCTAAATTGCAACTACCCCAAGA
LOC_Os12g34480
OsAffx.32020.2.S1_at--1077--5131Chr12:20843510..20843534 (25 bp)
GCAACTACCCCAAGAGCATCAATTT
LOC_Os12g34480
OsAffx.32020.2.S1_at--453--5511Chr12:20843480..20843504 (25 bp)
GAAAATATGAGTCGTTCTTTACCCA
LOC_Os12g34480
OsAffx.32020.2.S1_at--579--8892Chr12:20846780..20846804 (25 bp)
TGAGTCGTTCTTTACCCATTGGATA
NONE
OsAffx.32020.2.S1_at--516--1153Chr12:20846778..20846802 (25 bp)
AGTCGTTCTTTACCCATTGGATACT
NONE
OsAffx.32020.2.S1_at--937--6714Chr12:20846774..20846798 (25 bp)
GTTCTTTACCCATTGGATACTAACA
NONE
OsAffx.32020.2.S1_at--80--3611Chr12:20843457..20843481 (25 bp)
CATTGGATACTAACAAACTTGGTGA
LOC_Os12g34480
OsAffx.32020.2.S1_at--1103--5511Chr12:20843434..20843458 (25 bp)
GAAAAGAATTGTTGGTTACTACATA
LOC_Os12g34480
Target Sequence 
AAGGGTAACCATGGCACACTGCACACCGCGCTAAATTGCAACTACCCCAAGAGCATCAATTTTGAAAGAAAATATGAGTC
GTTCTTTACCCATTGGATACTAACAAACTTGGTGAAAAGAATTGTTGGTTACTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32020.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis