Browse Element(s) Details


Os.20284.1.S1_at

Description gb:AK109551.1
DB_XREF= gi:32994760
TID=Os.20284.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence.
FL= gb:AK109551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3452411/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34450NANA12+20834350..20835503Auxin-binding protein 4 precursor, putative
LOC_Os12g34460Os.49793.1.S1_at11/1112+20835982..20837973Auxin-binding protein 4 precursor, putative, expressed
LOC_Os12g34470OsAffx.32018.1.S1_at11/1112+20840598..20841257hypothetical protein
LOC_Os12g34480OsAffx.32020.1.S1_s_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34480OsAffx.32020.2.S1_at11/1112+20843401..20843868hypothetical protein
LOC_Os12g34490OsAffx.32020.1.S1_s_at11/1112+20846109..20846582hypothetical protein
LOC_Os12g34500Os.48388.1.S1_at8/1112+20851271..20852959expressed protein
LOC_Os12g34510Os.4755.1.S1_at11/1112+20854827..20855670Histone H2A, putative, expressed
LOC_Os12g34524Os.51257.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_x_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.20284.1.S1_at11/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524OsAffx.23331.4.S1_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34524Os.6093.2.S2_at1/1112+20856662..20866142Peroxidase family protein, expressed
LOC_Os12g34540NANA12+20884119..20885795retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20284.1.S1_at--222--7891Chr12:20857046..20857070 (25 bp)
GGTTCGACGCCCACTACTTCGTCAA
LOC_Os12g34524
Os.20284.1.S1_at--471--9871Chr12:20856927..20856951 (25 bp)
TACTTCCTCCGGGAGTTCAAGAACG
LOC_Os12g34524
Os.20284.1.S1_at--616--8031Chr12:20856916..20856940 (25 bp)
GGAGTTCAAGAACGCCGTCCGCAAG
LOC_Os12g34524
Os.20284.1.S1_at--977--9711Chr12:20856911..20856935 (25 bp)
TCAAGAACGCCGTCCGCAAGATGGG
LOC_Os12g34524
Os.20284.1.S1_at--331--9051Chr12:20856840..20856864 (25 bp)
TGCAGGGCCGTCAACGGGAAATGAT
LOC_Os12g34524
Os.20284.1.S1_at--813--8411Chr12:20856835..20856859 (25 bp)
GGCCGTCAACGGGAAATGATTTTAG
LOC_Os12g34524
Os.20284.1.S1_at--679--6291Chr12:20856797..20856821 (25 bp)
GATGATGAAATCGTCGTGATCAGTT
LOC_Os12g34524
Os.20284.1.S1_at--449--5591Chr12:20856791..20856815 (25 bp)
GAAATCGTCGTGATCAGTTCATAAT
LOC_Os12g34524
Os.20284.1.S1_at--678--4011Chr12:20856786..20856810 (25 bp)
CGTCGTGATCAGTTCATAATTGTGG
LOC_Os12g34524
Os.20284.1.S1_at--1129--6431Chr12:20856780..20856804 (25 bp)
GATCAGTTCATAATTGTGGATTTGT
LOC_Os12g34524
Os.20284.1.S1_at--48--6871Chr12:20856702..20856726 (25 bp)
GTTTGTTGTGAGTTTGGTATGGTAT
LOC_Os12g34524
Target Sequence 
GGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGC
CGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGG
CCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGG
TGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTC
AGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis